Add --noAutoCrop option to clitkExtractLung

[clitk.git] / segmentation / clitkExtractLung.ggo

diff --git a/segmentation/clitkExtractLung.ggo b/segmentation/clitkExtractLung.ggo
index a5cf62a745e5e9069a5895db6d955dd2c14f7105..12dd3e7040823c00e0676c005d95ec63d7522c94 100644 (file)
--- a/segmentation/clitkExtractLung.ggo
+++ b/segmentation/clitkExtractLung.ggo
@@ -16,9 +16,9 @@ option "verboseMemory"  -  "Display memory usage"         flag          off
 section "I/O"
 
 option "input"         i       "Input CT image filename"         string        yes
-option "afdb"          a       "Output Anatomical Feature DB (Carina position)"  string  no
-option "output"        o       "Output lungs mask filename"      string        yes
-option "outputTrachea" t       "Output trachea mask filename"    string        no
+option "afdb"          a       "Output Anatomical Feature DB (Carina position)"  string  no default="default.afdb"
+option "output"        o       "Output lungs mask filename"      string        no default="lung.mhd"
+option "outputTrachea" t       "Output trachea mask filename"    string        no default="trachea.mhd"
 
 section "Step 1 : Air remove"
 
@@ -61,3 +61,4 @@ section "Step 6 : fill holes"
 option "doNotFillHoles"                -  "Do not fill holes if set"                 flag on
 option "dir"                   d  "Directions (axes) to perform filling (defaults to 2,1,0)"   int multiple no
 
+option "noAutoCrop"    -       "If set : do no crop final mask to BoundingBox"                         flag    off