now dump anatomical info (carina position) into a DB

[clitk.git] / segmentation / clitkExtractLung.ggo

diff --git a/segmentation/clitkExtractLung.ggo b/segmentation/clitkExtractLung.ggo
index 883a01351dcdb4cd3f6054c5a894397f16e96121..e91a2eaed9c79344301337273ca49f55369acd47 100644 (file)
--- a/segmentation/clitkExtractLung.ggo
+++ b/segmentation/clitkExtractLung.ggo
@@ -16,6 +16,7 @@ section "I/O"
 option "input"         i       "Input CT image filename"         string        yes
 option "patient"       p       "Input patient mask filename"     string        yes
 option "patientBG"   - "Patient Background"              int           default="0" no
+option "afdb"          a       "Output Anatomical Feature DB (Carina position)"    string      no
 option "output"        o       "Output lungs mask filename"      string        yes
 option "outputTrachea" t       "Output trachea mask filename"    string        no
 
@@ -30,6 +31,7 @@ option "lastKeep1"   -        "Last label to keep"                      int           no
 
 section "Step 2 : find trachea"
 
+option "skipslices"                  -  "Number of slices to skip before searching seed" int no default="0"
 option "upperThresholdForTrachea"    - "Initial upper threshold for trachea"  double   no  default="-900"
 option "multiplierForTrachea"       -  "Multiplier for the region growing"    double   no  default="5"
 option "thresholdStepSizeForTrachea" - "Threshold step size"                  int      no  default="64"