option "upperThresholdForTrachea" - "0: Initial upper threshold for trachea" double no default="-900"
option "multiplierForTrachea" - "0: Multiplier for the region growing" double no default="5"
option "thresholdStepSizeForTrachea" - "0: Threshold step size" int no default="64"
-option "seed" - "0,1: Index of the trachea seed point (in pixel, not in mm)" int no multiple
+option "seed" - "0,1: Index of the trachea seed point (in mm NOT IN PIXELS)" float no multiple
option "doNotCheckTracheaVolume" - "0,1: If set, do not check the trachea volume" flag off
option "verboseRG" - "0,1: Verbose RegionGrowing" flag off
option "maxElongation" - "1: Maximum allowed elongation of candidate regions for the trachea" float no default="0.5"
section "Step 6 : fill holes"
option "doNotFillHoles" - "Do not fill holes if set" flag on
-option "dir" d "Directions (axes) to perform filling (defaults to 2,1,0)" int multiple no
+#option "dir" d "Directions (axes) to perform filling (defaults to 2,1,0)" int multiple no
section "Step 7 : lung separation (labelling)"
option "doNotSeparateLungs" - "Do not separate lungs if set" flag off
-
+option "removeSmallLabel" - "Remove small label (stomach?) before separation" flag on
option "noAutoCrop" - "If set : do no crop final mask to BoundingBox" flag off