With ITK 5, add itkReadRawBytesAfterSwappingMacro and itkWriteRawBytesAfterSwappingMacro

[clitk.git] / segmentation / clitkExtractLungFilter.h

diff --git a/segmentation/clitkExtractLungFilter.h b/segmentation/clitkExtractLungFilter.h
index ead4d988f36597401d3684ada7e69da62ee68851..6c50b1c2d96c85e3c9b8485d970d9ad6e0a261b3 100644 (file)
--- a/segmentation/clitkExtractLungFilter.h
+++ b/segmentation/clitkExtractLungFilter.h
@@ -164,7 +164,8 @@ namespace clitk {
     itkSetMacro(SeedPreProcessingThreshold, int);
     itkGetConstMacro(SeedPreProcessingThreshold, int);
 
-    void AddSeed(InternalIndexType s);
+    void AddSeedInPixels(InternalIndexType s);
+    void AddSeed(InputImagePointType s);
     std::vector<InternalIndexType> & GetSeeds() { return  m_Seeds; }
 
     itkSetMacro(TracheaVolumeMustBeCheckedFlag, bool);
@@ -175,6 +176,10 @@ namespace clitk {
     itkGetConstMacro(VerboseRegionGrowingFlag, bool);
     itkBooleanMacro(VerboseRegionGrowingFlag);    
 
+    itkSetMacro(RemoveSmallLabelBeforeSeparationFlag, bool);
+    itkGetConstMacro(RemoveSmallLabelBeforeSeparationFlag, bool);
+    itkBooleanMacro(RemoveSmallLabelBeforeSeparationFlag);    
+
     // Step 3 options ExtractLung
     itkSetMacro(NumberOfHistogramBins, int);
     itkGetConstMacro(NumberOfHistogramBins, int);
@@ -234,6 +239,7 @@ namespace clitk {
     MaskImagePixelType m_ForegroundValue;
     int m_MinimalComponentSize;
     bool m_AutoCrop;
+    bool m_RemoveSmallLabelBeforeSeparationFlag;
 
     // Step 1
     InputImagePixelType m_UpperThreshold;
@@ -247,6 +253,7 @@ namespace clitk {
     InputImagePixelType m_ThresholdStepSizeForTrachea;
     double m_MultiplierForTrachea;
     std::vector<InternalIndexType> m_Seeds;
+    std::vector<InputImagePointType> m_SeedsInMM;
     int m_NumberOfSlicesToSkipBeforeSearchingSeed;
     bool m_TracheaVolumeMustBeCheckedFlag;
     bool m_VerboseRegionGrowingFlag;