small improvement for S8

[clitk.git] / segmentation / clitkExtractLymphStations.ggo

diff --git a/segmentation/clitkExtractLymphStations.ggo b/segmentation/clitkExtractLymphStations.ggo
index 28d78f60cd2100a6ced760a30f030838e0eebf0d..c19c607120f51dd09ec96a1d1254d335d1071b43 100644 (file)
--- a/segmentation/clitkExtractLymphStations.ggo
+++ b/segmentation/clitkExtractLymphStations.ggo
@@ -10,18 +10,19 @@ option "verboseStep"    -  "Verbose each step"                flag          off
 option "writeStep"      w  "Write image at each step"    flag          off
 option "verboseOption"  -  "Display options values"       flag          off
 option "verboseWarningOff" -  "Do not display warning"    flag          off
+option "verboseMemory"  -  "Display memory usage"         flag          off
 
 section "I/O"
 
-option "mediastinum"   m       "Input mediastinum mask filename" string        yes
-option "trachea"       t       "Input trachea mask filename"     string        yes
-option "output"        o       "Output lungs mask filename"      string        yes
-
-option "carenaZposition"               c       "Sup-Inf position of the carena (in mm, with origin)" double no
-option "middleLobeBronchusZposition"           b       "Sup-Inf position of the middle lobe bronchus (in mm, with origin)" double no
-option "spacing"     - "Intermediate resampling spacing"         double no default="6"
-option "fuzzy1"             -  "Fuzzy relative position threshold"       double no default="0.6"
-
-
-
+option "afdb"          a       "Input Anatomical Feature DB"     string        no
+option "input"         i       "Input filename"                  string        no
+option "output"        o       "Output lungs mask filename"      string        no
+option "station"       -       "Force to compute station even if already exist in the DB"      string  no multiple
+
+section "Options for Station 8"
+option "maxAntSpine" - "Distance max to anterior part of the spine in mm"  double no default="10"
+option "esophagusDilatationForAnt" - "Dilatation of esophagus, in mm, for 'anterior' limits (default=15,2,1)" double no multiple
+option "esophagusDilatationForRight" - "Dilatation of esophagus, in mm, for 'right' limits (default=5,10,1)" double no multiple
+option "fuzzyThresholdForS8" - "Threshold for 'Post' to dilated Esophagus" double default="0.5" no 
+option "injectedThresholdForS8" - "Threshold injected areas in the ct" double default="150" no