merge cvs -> git

[clitk.git] / segmentation / clitkExtractLymphStations.ggo

diff --git a/segmentation/clitkExtractLymphStations.ggo b/segmentation/clitkExtractLymphStations.ggo
index 1f3f54672df82d376de5cdbb91699c3de4abcefd..d789824756ce33ad9d6fb37e9adf725d44b6a0db 100644 (file)
--- a/segmentation/clitkExtractLymphStations.ggo
+++ b/segmentation/clitkExtractLymphStations.ggo
@@ -10,14 +10,38 @@ option "verboseStep"    -  "Verbose each step"                flag          off
 option "writeStep"      w  "Write image at each step"    flag          off
 option "verboseOption"  -  "Display options values"       flag          off
 option "verboseWarningOff" -  "Do not display warning"    flag          off
+option "verboseMemory"  -  "Display memory usage"         flag          off
 
 section "I/O"
 
 option "afdb"          a       "Input Anatomical Feature DB"     string        no
 option "input"         i       "Input filename"                  string        no
 option "output"        o       "Output lungs mask filename"      string        no
-
-
-
-
-
+option "station"       -       "Force to compute station even if already exist in the DB"      string  no multiple
+
+section "Options for Station 8"
+option "maxAntSpine"                 - "Distance max to anterior part of the spine in mm"  double no default="10"
+option "esophagusDilatationForAnt"   - "Dilatation of esophagus, in mm, for 'anterior' limits (default=15,2,1)" double no multiple
+option "esophagusDilatationForRight" - "Dilatation of esophagus, in mm, for 'right' limits (default=5,10,1)" double no multiple
+option "tS8_Esophagus"               - "Threshold for 'Post' to dilated Esophagus" double default="0.5" no 
+option "injectedThresholdForS8"      - "Threshold injected areas in the ct" double default="150" no 
+
+section "Options for Station 7"
+option "tS7_Bronchi"                    - "Threshold for Left/Right bronchi" double default="0.1" no 
+option "tS7_LeftSuperiorPulmonaryVein"  - "Threshold for LeftSuperiorPulmonaryVein" double default="0.3" no 
+option "tS7_RightSuperiorPulmonaryVein" - "Threshold for RightSuperiorPulmonaryVein" double default="0.2" no 
+option "tS7_RightPulmonaryArtery"       - "Threshold for RightPulmonaryArtery" double default="0.3" no 
+option "tS7_LeftPulmonaryArtery"        - "Threshold for LeftPulmonaryArtery (NOT USEFUL YET)" double default="0.5" no 
+option "tS7_SVC"                        - "Threshold for SVC" double default="0.2" no 
+
+section "Options for Station 3A"
+option "tS3A_Sternum"          - "Threshold for Post to Sternum" double default="0.5" no 
+option "tS3A_SubclavianArtery" - "Threshold for Ant to SubclavianArtery" double default="0.2" no 
+
+section "Options for Station 2RL"
+option "tS2RL_CommonCarotidArtery"   - "Threshold for NotAntTo to CommonCarotidArtery"   double default="0.7" no 
+option "tS2RL_BrachioCephalicTrunk"  - "Threshold for NotAntTo to BrachioCephalicTrunk"  double default="0.7" no 
+option "tS2RL_BrachioCephalicVein"   - "Threshold for NotAntTo to BrachioCephalicVein"   double default="0.3" no 
+option "tS2RL_Aorta"                 - "Threshold for RightTo  to Aorta"                 double default="0.7" no 
+option "tS2RL_SubclavianArteryRight" - "Threshold for NotLeft  to SubclavianArteryRight" double default="0.5" no 
+option "tS2RL_SubclavianArteryLeft"  - "Threshold for NotRight to SubclavianArteryLeft"  double default="0.8" no