#define CLITKEXTRACTLYMPHSTATIONSFILTER_H
// clitk
-#include "clitkFilterBase.h"
-#include "clitkFilterWithAnatomicalFeatureDatabaseManagement.h"
+#include "clitkStructuresExtractionFilter.h"
// vtk
#include <vtkPolyData.h>
template <class TImageType>
class ITK_EXPORT ExtractLymphStationsFilter:
- public virtual clitk::FilterBase,
- public clitk::FilterWithAnatomicalFeatureDatabaseManagement,
- public itk::ImageToImageFilter<TImageType, itk::Image<uchar, 3> >
+ public clitk::StructuresExtractionFilter<TImageType>
{
public:
/** Standard class typedefs. */
- typedef itk::ImageToImageFilter<TImageType, itk::Image<uchar, 3> > Superclass;
+ typedef clitk::StructuresExtractionFilter<TImageType> Superclass;
typedef ExtractLymphStationsFilter Self;
typedef itk::SmartPointer<Self> Pointer;
typedef itk::SmartPointer<const Self> ConstPointer;
/** ImageDimension constants */
itkStaticConstMacro(ImageDimension, unsigned int, ImageType::ImageDimension);
FILTERBASE_INIT;
-
+
itkGetConstMacro(BackgroundValue, MaskImagePixelType);
itkGetConstMacro(ForegroundValue, MaskImagePixelType);
itkSetMacro(BackgroundValue, MaskImagePixelType);
itkSetMacro(ForegroundValue, MaskImagePixelType);
// Station 8
- // itkSetMacro(DistanceMaxToAnteriorPartOfTheSpine, double);
- //itkGetConstMacro(DistanceMaxToAnteriorPartOfTheSpine, double);
itkSetMacro(EsophagusDiltationForAnt, MaskImagePointType);
itkGetConstMacro(EsophagusDiltationForAnt, MaskImagePointType);
itkSetMacro(EsophagusDiltationForRight, MaskImagePointType);
virtual void GenerateInputRequestedRegion();
virtual void GenerateData();
+ // To avoid repeat "this->"
+ AnatomicalFeatureDatabase * GetAFDB() { return clitk::FilterWithAnatomicalFeatureDatabaseManagement::GetAFDB(); }
+ void WriteAFDB() { clitk::FilterWithAnatomicalFeatureDatabaseManagement::WriteAFDB(); }
+ void LoadAFDB() { clitk::FilterWithAnatomicalFeatureDatabaseManagement::LoadAFDB(); }
+ void StartNewStep(std::string s) { clitk::FilterBase::StartNewStep(s); }
+ void StartSubStep() { clitk::FilterBase::StartSubStep(); }
+ template<class TInternalImageType>
+ void StopCurrentStep(typename TInternalImageType::Pointer p, std::string txt="") { clitk::FilterBase::StopCurrentStep<TInternalImageType>(p, txt); }
+ void StopCurrentStep() {clitk::FilterBase::StopCurrentStep(); }
+ void StopSubStep() {clitk::FilterBase::StopSubStep(); }
+
ImageConstPointer m_Input;
MaskImagePointer m_Mediastinum;
MaskImagePointer m_Working_Support;
double FindInferiorBorderOfAorticArch();
void FindLeftAndRightBronchi();
void FindLineForS7S8Separation(MaskImagePointType & A, MaskImagePointType & B);
- MaskImagePointer FindAntPostVessels();
+ MaskImagePointer FindAntPostVesselsOLD();
MaskImagePointer FindAntPostVessels2();
// Global parameters
MaskImagePointer LimitsWithTrachea(MaskImageType * input,
int extremaDirection, int lineDirection,
double offset);
-
// Station 8
- // double m_DistanceMaxToAnteriorPartOfTheSpine;
double m_DiaphragmInferiorLimit;
double m_OriginOfRightMiddleLobeBronchusZ;
double m_InjectedThresholdForS8;
// Station 3A
void ExtractStation_3A();
void ExtractStation_3A_SetDefaultValues();
- void ExtractStation_3A_AntPost_S5();
- void ExtractStation_3A_AntPost_S6();
+ void ExtractStation_3A_Post_Left_Limits_With_Aorta_S5_Support();
+ void ExtractStation_3A_Post_Limits_With_Dilated_Aorta_S6_Support();
void ExtractStation_3A_AntPost_Superiorly();
void ExtractStation_3A_Remove_Structures();
- void ExtractStation_3A_PostToBones();
// Station 2RL
void ExtractStation_2RL();
void ExtractStation_2RL_SetDefaultValues();
- void ExtractStation_2RL_SI_Limits();
- void ExtractStation_2RL_Ant_Limits();
- void ExtractStation_2RL_Ant_Limits2();
- void ExtractStation_2RL_Post_Limits();
- void ExtractStation_2RL_LR_Limits();
- void ExtractStation_2RL_Remove_Structures();
- void ExtractStation_2RL_SeparateRL();
+ void ExtractStation_2RL_Ant_Limits(std::string s);
+ void ExtractStation_2RL_Remove_Structures(std::string s);
+ void ExtractStation_2RL_Cut_BrachioCephalicVein_superiorly_when_it_split();
vtkSmartPointer<vtkPolyData> Build3DMeshFrom2DContour(const std::vector<ImagePointType> & points);
+ // Station 1RL
+ void ExtractStation_1RL();
+ void ExtractStation_1RL_SetDefaultValues();
+ void ExtractStation_1RL_Ant_Limits();
+ void ExtractStation_1RL_Post_Limits();
+
+ // Station 4RL
+ void ExtractStation_4RL_SetDefaultValues();
+ void ExtractStation_4RL();
+ void ExtractStation_4RL_SI_Limits();
+ void ExtractStation_4RL_LR_Limits();
+ void ExtractStation_4RL_AP_Limits();
+ MaskImagePointer m_RightSupport;
+ MaskImagePointer m_LeftSupport;
+
+
+
// Station 7
void ExtractStation_7();
void ExtractStation_7_SetDefaultValues();
void ExtractStation_7_SI_Limits();
void ExtractStation_7_RL_Interior_Limits();
-
void ExtractStation_7_RL_Limits_OLD();
void ExtractStation_7_Posterior_Limits();
void ExtractStation_7_Remove_Structures();
ListOfPointsType & LR,
ListOfPointsType & Ant,
ListOfPointsType & Post);
- // Station 4RL
- void ExtractStation_4RL();
- void ExtractStation_4RL_SI_Limits();
- void ExtractStation_4RL_LR_Limits();
- void ExtractStation_4RL_AP_Limits();
- MaskImagePointer m_RightSupport;
- MaskImagePointer m_LeftSupport;
-
private:
ExtractLymphStationsFilter(const Self&); //purposely not implemented
void operator=(const Self&); //purposely not implemented
#ifndef ITK_MANUAL_INSTANTIATION
#include "clitkExtractLymphStationsFilter.txx"
#include "clitkExtractLymphStation_Supports.txx"
-#include "clitkExtractLymphStation_8.txx"
#include "clitkExtractLymphStation_3P.txx"
#include "clitkExtractLymphStation_2RL.txx"
#include "clitkExtractLymphStation_3A.txx"
-#include "clitkExtractLymphStation_7.txx"
#include "clitkExtractLymphStation_4RL.txx"
+#include "clitkExtractLymphStation_1RL.txx"
+#include "clitkExtractLymphStation_8.txx"
+#include "clitkExtractLymphStation_7.txx"
#endif
#endif