ExtractStation_3A_SetDefaultValues();
ExtractStation_1RL_SetDefaultValues();
ExtractStation_4RL_SetDefaultValues();
+ ExtractStation_5_SetDefaultValues();
+ ExtractStation_6_SetDefaultValues();
+ // TODO
ExtractStation_7_SetDefaultValues();
ExtractStation_8_SetDefaultValues();
}
this->StopSubStep();
}
- // Extract Station3P
+ // Extract Stations
+ ExtractStation_1RL();
+ ExtractStation_2RL();
ExtractStation_3P();
-
- // Extract Station3A
ExtractStation_3A();
-
- // Extract Station2RL
- ExtractStation_2RL();
-
- // Extract Station1RL
- ExtractStation_1RL();
-
- // Extract Station1RL
ExtractStation_4RL();
+ ExtractStation_5();
+ ExtractStation_6();
// ---------- TODO -----------------------
binarizedContour = clitk::CropImageAlongOneAxis<MaskImageType>(binarizedContour, 2, inf, sup,
false, GetBackgroundValue());
// Update the AFDB
- writeImage<MaskImageType>(binarizedContour, "seg/AntPostVesselsSeparation.mhd");
- this->GetAFDB()->SetImageFilename("AntPostVesselsSeparation", "seg/AntPostVesselsSeparation.mhd");
+ writeImage<MaskImageType>(binarizedContour, "seg/AntPostVesselsSeparation.mha");
+ this->GetAFDB()->SetImageFilename("AntPostVesselsSeparation", "seg/AntPostVesselsSeparation.mha");
this->WriteAFDB();
return binarizedContour;
typedef std::map<std::string, MaskImagePointer>::iterator MapIter;
MapOfStructures["BrachioCephalicArtery"] = this->GetAFDB()->template GetImage<MaskImageType>("BrachioCephalicArtery");
MapOfStructures["BrachioCephalicVein"] = this->GetAFDB()->template GetImage<MaskImageType>("BrachioCephalicVein");
- MapOfStructures["CommonCarotidArteryLeft"] = this->GetAFDB()->template GetImage<MaskImageType>("CommonCarotidArteryLeft");
- MapOfStructures["CommonCarotidArteryRight"] = this->GetAFDB()->template GetImage<MaskImageType>("CommonCarotidArteryRight");
- MapOfStructures["SubclavianArteryLeft"] = this->GetAFDB()->template GetImage<MaskImageType>("SubclavianArteryLeft");
- MapOfStructures["SubclavianArteryRight"] = this->GetAFDB()->template GetImage<MaskImageType>("SubclavianArteryRight");
+ MapOfStructures["CommonCarotidArteryLeft"] = this->GetAFDB()->template GetImage<MaskImageType>("LeftCommonCarotidArtery");
+ MapOfStructures["CommonCarotidArteryRight"] = this->GetAFDB()->template GetImage<MaskImageType>("RightCommonCarotidArtery");
+ MapOfStructures["SubclavianArteryLeft"] = this->GetAFDB()->template GetImage<MaskImageType>("LeftSubclavianArtery");
+ MapOfStructures["SubclavianArteryRight"] = this->GetAFDB()->template GetImage<MaskImageType>("RightSubclavianArtery");
MapOfStructures["Thyroid"] = this->GetAFDB()->template GetImage<MaskImageType>("Thyroid");
MapOfStructures["Aorta"] = this->GetAFDB()->template GetImage<MaskImageType>("Aorta");
MapOfStructures["Trachea"] = this->GetAFDB()->template GetImage<MaskImageType>("Trachea");
false, GetBackgroundValue());
// Update the AFDB
- writeImage<MaskImageType>(binarizedContour, "seg/AntPostVesselsSeparation.mhd");
- this->GetAFDB()->SetImageFilename("AntPostVesselsSeparation", "seg/AntPostVesselsSeparation.mhd");
+ writeImage<MaskImageType>(binarizedContour, "seg/AntPostVesselsSeparation.mha");
+ this->GetAFDB()->SetImageFilename("AntPostVesselsSeparation", "seg/AntPostVesselsSeparation.mha");
this->WriteAFDB();
return binarizedContour;