itkv4 migration:

[clitk.git] / segmentation / clitkExtractLymphStationsGenericFilter.txx

diff --git a/segmentation/clitkExtractLymphStationsGenericFilter.txx b/segmentation/clitkExtractLymphStationsGenericFilter.txx
index bc5c9366c1d57adefbb65dd5dfa4168402a01cc2..0dafe7a96c0dc9f3898fa3c29093cf483d8bae5d 100644 (file)
--- a/segmentation/clitkExtractLymphStationsGenericFilter.txx
+++ b/segmentation/clitkExtractLymphStationsGenericFilter.txx
@@ -70,6 +70,7 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   f->SetAFDBFilename(mArgsInfo.afdb_arg);  
   f->SetDistanceMaxToAnteriorPartOfTheSpine(mArgsInfo.maxAntSpine_arg);
   f->SetFuzzyThresholdForS8(mArgsInfo.fuzzyThresholdForS8_arg);
+  f->SetInjectedThresholdForS8(mArgsInfo.injectedThresholdForS8_arg);
 
   // Check multiple options for radius dilatation
   /*
@@ -104,6 +105,17 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
     }
   }
   f->SetEsophagusDiltationForRight(p);  
+  
+  for(uint i=0; i<mArgsInfo.station_given; i++)
+    f->AddComputeStation(mArgsInfo.station_arg[i]);
+
+  // Station 7
+  f->SetFuzzyThresholdForS7("Bronchi", mArgsInfo.tS7_Bronchi_arg);
+  f->SetFuzzyThresholdForS7("LeftSuperiorPulmonaryVein", mArgsInfo.tS7_LeftSuperiorPulmonaryVein_arg);
+  f->SetFuzzyThresholdForS7("RightSuperiorPulmonaryVein", mArgsInfo.tS7_RightSuperiorPulmonaryVein_arg);
+  f->SetFuzzyThresholdForS7("RightPulmonaryArtery", mArgsInfo.tS7_RightPulmonaryArtery_arg);
+  f->SetFuzzyThresholdForS7("LeftPulmonaryArtery", mArgsInfo.tS7_LeftPulmonaryArtery_arg);
+  f->SetFuzzyThresholdForS7("SVC", mArgsInfo.tS7_SVC_arg);
 }
 //--------------------------------------------------------------------