Second version of RelativePositionAnalyzer

[clitk.git] / segmentation / clitkExtractLymphStationsGenericFilter.txx

diff --git a/segmentation/clitkExtractLymphStationsGenericFilter.txx b/segmentation/clitkExtractLymphStationsGenericFilter.txx
index 8b6167ec9090ca4fc1d17dcad7f33dd0b4a21767..317c78ab588b1e0d36f53fe0c4d76241de15c1b7 100644 (file)
--- a/segmentation/clitkExtractLymphStationsGenericFilter.txx
+++ b/segmentation/clitkExtractLymphStationsGenericFilter.txx
@@ -69,6 +69,8 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   f->SetVerboseMemoryFlag(mArgsInfo.verboseMemory_flag);
   f->SetAFDBFilename(mArgsInfo.afdb_arg);  
 
+  f->SetComputeStationsSupportsFlag(!mArgsInfo.nosupport_flag);
+
   // Station 8
   //f->SetDistanceMaxToAnteriorPartOfTheSpine(mArgsInfo.S8_maxAntSpine_arg);
   f->SetFuzzyThreshold("8", "Esophagus", mArgsInfo.S8_ft_Esophagus_arg);
@@ -111,6 +113,8 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   for(uint i=0; i<mArgsInfo.station_given; i++)
     f->AddComputeStation(mArgsInfo.station_arg[i]);
 
+  // Station 3A
+  
   // Station 7
   f->SetFuzzyThreshold("7", "Bronchi", mArgsInfo.S7_ft_Bronchi_arg);
   f->SetFuzzyThreshold("7", "LeftSuperiorPulmonaryVein", mArgsInfo.S7_ft_LeftSuperiorPulmonaryVein_arg);
@@ -120,17 +124,13 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   f->SetFuzzyThreshold("7", "SVC", mArgsInfo.S7_ft_SVC_arg);
   f->SetS7_UseMostInferiorPartOnlyFlag(mArgsInfo.S7_UseMostInferiorPartOnly_flag);
 
-  // Station 3A
-  f->SetFuzzyThreshold("3A", "Sternum", mArgsInfo.S3A_ft_Sternum_arg);
-  f->SetFuzzyThreshold("3A", "SubclavianArtery", mArgsInfo.S3A_ft_SubclavianArtery_arg);
-  
   // Station 2RL
-  f->SetFuzzyThreshold("2RL", "CommonCarotidArtery", mArgsInfo.S2RL_ft_CommonCarotidArtery_arg);
-  f->SetFuzzyThreshold("2RL", "BrachioCephalicTrunk", mArgsInfo.S2RL_ft_BrachioCephalicTrunk_arg);
-  f->SetFuzzyThreshold("2RL", "BrachioCephalicVein", mArgsInfo.S2RL_ft_BrachioCephalicVein_arg);
-  f->SetFuzzyThreshold("2RL", "Aorta", mArgsInfo.S2RL_ft_Aorta_arg);
-  f->SetFuzzyThreshold("2RL", "SubclavianArteryLeft", mArgsInfo.S2RL_ft_SubclavianArteryLeft_arg);
-  f->SetFuzzyThreshold("2RL", "SubclavianArteryRight", mArgsInfo.S2RL_ft_SubclavianArteryRight_arg);
+
+  // Station 1RL
+
+  // Set RelativePositionList filenames
+  for(uint i=0; i<mArgsInfo.relpos_given; i++) 
+    f->AddRelativePositionListFilename(mArgsInfo.relpos_arg[i]);
 }
 //--------------------------------------------------------------------