clitk::ExtractLymphStationsGenericFilter<ArgsInfoType>::
SetOptionsFromArgsInfoToFilter(FilterType * f)
{
- f->SetVerboseOption(mArgsInfo.verbose_flag);
- f->SetVerboseStep(mArgsInfo.verboseStep_flag);
- f->SetWriteStep(mArgsInfo.writeStep_flag);
+ f->SetVerboseOptionFlag(mArgsInfo.verbose_flag);
+ f->SetVerboseStepFlag(mArgsInfo.verboseStep_flag);
+ f->SetWriteStepFlag(mArgsInfo.writeStep_flag);
+ f->SetVerboseMemoryFlag(mArgsInfo.verboseMemory_flag);
f->SetAFDBFilename(mArgsInfo.afdb_arg);
+
+ // Station 8
+ //f->SetDistanceMaxToAnteriorPartOfTheSpine(mArgsInfo.S8_maxAntSpine_arg);
+ f->SetFuzzyThreshold("8", "Esophagus", mArgsInfo.S8_ft_Esophagus_arg);
+ // f->SetInjectedThresholdForS8(mArgsInfo.tS8_injectedThreshold_arg);
+
+ // Check multiple options for radius dilatation
+ /*
+ typename FilterType::MaskImagePointType p;
+ SetMultipleOptionMacro(mArgsInfo, esophagusDilatation, 3, p);
+ default ? = set before
+ exception if fail
+ */
+ typename FilterType::MaskImagePointType p;
+ p[0] = 7; p[1] = 5; p[2] = 0; // default value
+ if (mArgsInfo.S8_esophagusDilatationForAnt_given == 3) {
+ for(uint i=0; i<3; i++)
+ p[i] = mArgsInfo.S8_esophagusDilatationForAnt_arg[i];
+ }
+ else {
+ if (mArgsInfo.S8_esophagusDilatationForAnt_given == 1) {
+ for(uint i=0; i<3; i++)
+ p[i] = mArgsInfo.S8_esophagusDilatationForAnt_arg[0];
+ }
+ }
+ f->SetEsophagusDiltationForAnt(p);
+
+ p[0] = 5; p[1] = 10; p[2] = 1; // default value
+ if (mArgsInfo.S8_esophagusDilatationForRight_given == 3) {
+ for(uint i=0; i<3; i++)
+ p[i] = mArgsInfo.S8_esophagusDilatationForRight_arg[i];
+ }
+ else {
+ if (mArgsInfo.S8_esophagusDilatationForRight_given == 1) {
+ for(uint i=0; i<3; i++)
+ p[i] = mArgsInfo.S8_esophagusDilatationForRight_arg[0];
+ }
+ }
+ f->SetEsophagusDiltationForRight(p);
+
+ for(uint i=0; i<mArgsInfo.station_given; i++)
+ f->AddComputeStation(mArgsInfo.station_arg[i]);
+
+ // Station 7
+ f->SetFuzzyThreshold("7", "Bronchi", mArgsInfo.S7_ft_Bronchi_arg);
+ f->SetFuzzyThreshold("7", "LeftSuperiorPulmonaryVein", mArgsInfo.S7_ft_LeftSuperiorPulmonaryVein_arg);
+ f->SetFuzzyThreshold("7", "RightSuperiorPulmonaryVein", mArgsInfo.S7_ft_RightSuperiorPulmonaryVein_arg);
+ f->SetFuzzyThreshold("7", "RightPulmonaryArtery", mArgsInfo.S7_ft_RightPulmonaryArtery_arg);
+ f->SetFuzzyThreshold("7", "LeftPulmonaryArtery", mArgsInfo.S7_ft_LeftPulmonaryArtery_arg);
+ f->SetFuzzyThreshold("7", "SVC", mArgsInfo.S7_ft_SVC_arg);
+ f->SetS7_UseMostInferiorPartOnlyFlag(mArgsInfo.S7_UseMostInferiorPartOnly_flag);
+
+ // Station 3A
+ f->SetFuzzyThreshold("3A", "Sternum", mArgsInfo.S3A_ft_Sternum_arg);
+ f->SetFuzzyThreshold("3A", "SubclavianArtery", mArgsInfo.S3A_ft_SubclavianArtery_arg);
+
+ // Station 2RL
+ f->SetFuzzyThreshold("2RL", "CommonCarotidArtery", mArgsInfo.S2RL_ft_CommonCarotidArtery_arg);
+ f->SetFuzzyThreshold("2RL", "BrachioCephalicTrunk", mArgsInfo.S2RL_ft_BrachioCephalicTrunk_arg);
+ f->SetFuzzyThreshold("2RL", "BrachioCephalicVein", mArgsInfo.S2RL_ft_BrachioCephalicVein_arg);
+ f->SetFuzzyThreshold("2RL", "Aorta", mArgsInfo.S2RL_ft_Aorta_arg);
+ f->SetFuzzyThreshold("2RL", "SubclavianArteryLeft", mArgsInfo.S2RL_ft_SubclavianArteryLeft_arg);
+ f->SetFuzzyThreshold("2RL", "SubclavianArteryRight", mArgsInfo.S2RL_ft_SubclavianArteryRight_arg);
}
//--------------------------------------------------------------------