f->SetWriteStepFlag(mArgsInfo.writeStep_flag);
f->SetVerboseMemoryFlag(mArgsInfo.verboseMemory_flag);
f->SetAFDBFilename(mArgsInfo.afdb_arg);
- f->SetDistanceMaxToAnteriorPartOfTheSpine(mArgsInfo.maxAntSpine_arg);
- f->SetFuzzyThresholdForS8(mArgsInfo.fuzzyThresholdForS8_arg);
+ if (mArgsInfo.afdb_path_given) f->SetAFDBPath(mArgsInfo.afdb_path_arg);
+ f->SetForceSupportsFlag(mArgsInfo.force_support_flag);
+ f->SetSupportLimitsFilename(mArgsInfo.support_limits_arg);
+ f->SetCheckSupportFlag(mArgsInfo.check_support_limits_flag);
+
+ // Station 8
+ //f->SetDistanceMaxToAnteriorPartOfTheSpine(mArgsInfo.S8_maxAntSpine_arg);
+ f->SetFuzzyThreshold("8", "Esophagus", mArgsInfo.S8_ft_Esophagus_arg);
+ // f->SetInjectedThresholdForS8(mArgsInfo.tS8_injectedThreshold_arg);
// Check multiple options for radius dilatation
/*
*/
typename FilterType::MaskImagePointType p;
p[0] = 7; p[1] = 5; p[2] = 0; // default value
- if (mArgsInfo.esophagusDilatationForAnt_given == 3) {
+ if (mArgsInfo.S8_esophagusDilatationForAnt_given == 3) {
for(uint i=0; i<3; i++)
- p[i] = mArgsInfo.esophagusDilatationForAnt_arg[i];
+ p[i] = mArgsInfo.S8_esophagusDilatationForAnt_arg[i];
}
else {
- if (mArgsInfo.esophagusDilatationForAnt_given == 1) {
+ if (mArgsInfo.S8_esophagusDilatationForAnt_given == 1) {
for(uint i=0; i<3; i++)
- p[i] = mArgsInfo.esophagusDilatationForAnt_arg[0];
+ p[i] = mArgsInfo.S8_esophagusDilatationForAnt_arg[0];
}
}
f->SetEsophagusDiltationForAnt(p);
p[0] = 5; p[1] = 10; p[2] = 1; // default value
- if (mArgsInfo.esophagusDilatationForRight_given == 3) {
+ if (mArgsInfo.S8_esophagusDilatationForRight_given == 3) {
for(uint i=0; i<3; i++)
- p[i] = mArgsInfo.esophagusDilatationForRight_arg[i];
+ p[i] = mArgsInfo.S8_esophagusDilatationForRight_arg[i];
}
else {
- if (mArgsInfo.esophagusDilatationForRight_given == 1) {
+ if (mArgsInfo.S8_esophagusDilatationForRight_given == 1) {
for(uint i=0; i<3; i++)
- p[i] = mArgsInfo.esophagusDilatationForRight_arg[0];
+ p[i] = mArgsInfo.S8_esophagusDilatationForRight_arg[0];
}
}
f->SetEsophagusDiltationForRight(p);
for(uint i=0; i<mArgsInfo.station_given; i++)
f->AddComputeStation(mArgsInfo.station_arg[i]);
+
+ // Station 3A
+
+ // Station 7
+ f->SetFuzzyThreshold("7", "Bronchi", mArgsInfo.S7_ft_Bronchi_arg);
+ f->SetFuzzyThreshold("7", "LeftSuperiorPulmonaryVein", mArgsInfo.S7_ft_LeftSuperiorPulmonaryVein_arg);
+ f->SetFuzzyThreshold("7", "RightSuperiorPulmonaryVein", mArgsInfo.S7_ft_RightSuperiorPulmonaryVein_arg);
+ f->SetFuzzyThreshold("7", "RightPulmonaryArtery", mArgsInfo.S7_ft_RightPulmonaryArtery_arg);
+ f->SetFuzzyThreshold("7", "LeftPulmonaryArtery", mArgsInfo.S7_ft_LeftPulmonaryArtery_arg);
+ f->SetFuzzyThreshold("7", "SVC", mArgsInfo.S7_ft_SVC_arg);
+ f->SetS7_UseMostInferiorPartOnlyFlag(mArgsInfo.S7_UseMostInferiorPartOnly_flag);
+
+ // Station 2RL
+
+ // Station 1RL
+
+ // Set RelativePositionList filenames
+ for(uint i=0; i<mArgsInfo.relpos_given; i++)
+ f->AddRelativePositionListFilename(mArgsInfo.relpos_arg[i]);
}
//--------------------------------------------------------------------