Second version of RelativePositionAnalyzer

[clitk.git] / segmentation / clitkExtractMediastinalVessels.ggo

diff --git a/segmentation/clitkExtractMediastinalVessels.ggo b/segmentation/clitkExtractMediastinalVessels.ggo
index 718c24ee06e92f1fd3f306c2481d4d28c32a0e17..2e537971f0840a2a080e44737bbb9e64fdae5eef 100644 (file)
--- a/segmentation/clitkExtractMediastinalVessels.ggo
+++ b/segmentation/clitkExtractMediastinalVessels.ggo
@@ -10,12 +10,24 @@ option "verboseStep"    -  "Verbose each step"                flag          off
 option "writeStep"      w  "Write image at each step"    flag          off
 option "verboseOption"  -  "Display options values"       flag          off
 option "verboseWarningOff" -  "Do not display warning"    flag          off
-option "verboseMemory"  -  "Display memory usage"         flag          off
+option "verboseMemory"     -  "Display memory usage"      flag          off
+option "verboseTracking"   -  "Verbose tracking"          flag          off
 
 section "I/O"
 
 option "afdb"          a       "Input Anatomical Feature DB"     string        yes
 option "input"         i       "Input CT filename"               string        yes
-option "output"        o       "Output folder"                   string        yes
+option "output"        o       "Output filename"                 string        yes
+option "seed"          s        "Seed point name in AFDB"         string       yes
+option "name"          n        "Name of the vessels to sought"   string       yes
 
-option "threshold"     t       "Initial threshold"               double default="140" no
+option "thresholdHigh" t       "Initial high threshold"          double default="140" no
+option "thresholdLow"  l       "Initial low threshold"           double default="55" no
+option "erode"         e       "Erosion radius in pixel"         int default="2" no
+option "dilate"        d       "Dilatation radius in pixel"      int default="9" no
+option "maxPost"       -       "Max distance post to Carina"     double default="10" no
+option "maxAnt"        -       "Max distance ant to Carina"      double default="40" no
+option "maxLeft"       -       "Max distance left to Carina"     double default="35" no
+option "maxRight"      -       "Max distance right to Carina"    double default="35" no
+option "bif"           -       "Max number of bifurcation during traking"    int default="0" no
+option "open"          -       "Final opening radius"            int default="1" no
\ No newline at end of file