Debug RTStruct conversion with empty struc

[clitk.git] / segmentation / clitkExtractPatientFilter.h

diff --git a/segmentation/clitkExtractPatientFilter.h b/segmentation/clitkExtractPatientFilter.h
index b4717477dee9aa52c033701fc78e188e89c7538e..fe290cc2302603808682cf1c49887494ca0c72a5 100644 (file)
--- a/segmentation/clitkExtractPatientFilter.h
+++ b/segmentation/clitkExtractPatientFilter.h
@@ -21,6 +21,7 @@
 
 #include "clitkFilterBase.h"
 #include "clitkFilterWithAnatomicalFeatureDatabaseManagement.h"
+#include "clitkSegmentationUtils.h"
 
 namespace clitk {
   
@@ -90,80 +91,63 @@ namespace clitk {
     void SetInput(const TInputImageType * image);
     itkSetMacro(OutputPatientFilename, std::string);
     itkGetMacro(OutputPatientFilename, std::string);
-    GGO_DefineOption(output, SetOutputPatientFilename, std::string);
-
-    // Set all options at a time
-    template<class ArgsInfoType>
-      void SetArgsInfo(ArgsInfoType arg);
 
     // Step 1
     itkSetMacro(UpperThreshold, InputImagePixelType);
     itkGetMacro(UpperThreshold, InputImagePixelType);
-    GGO_DefineOption(upper, SetUpperThreshold, InputImagePixelType);
 
     itkSetMacro(LowerThreshold, InputImagePixelType);
     itkGetMacro(LowerThreshold, InputImagePixelType);
-    itkSetMacro(UseLowerThreshold, bool);    
+    itkSetMacro(UseLowerThreshold, bool);   
+    itkGetMacro(PrimaryOpeningRadius, unsigned int);
+    itkSetMacro(PrimaryOpeningRadius, unsigned int);
     itkGetConstMacro(UseLowerThreshold, bool);    
     itkBooleanMacro(UseLowerThreshold);
-    GGO_DefineOption_WithTest(lower, SetLowerThreshold, InputImagePixelType, UseLowerThreshold);
 
     // Step 2
     itkSetMacro(DecomposeAndReconstructDuringFirstStep, bool);
     itkGetConstMacro(DecomposeAndReconstructDuringFirstStep, bool);
     itkBooleanMacro(DecomposeAndReconstructDuringFirstStep);
-    GGO_DefineOption_Flag(erode1, SetDecomposeAndReconstructDuringFirstStep);
 
     itkSetMacro(Radius1, InternalImageSizeType);
     itkGetConstMacro(Radius1, InternalImageSizeType);
-    GGO_DefineOption_Vector(radius1, SetRadius1, InternalImageSizeType, ImageDimension, true);
 
     itkSetMacro(MaximumNumberOfLabels1, int);
     itkGetConstMacro(MaximumNumberOfLabels1, int);
-    GGO_DefineOption(max1, SetMaximumNumberOfLabels1, int);
 
     itkSetMacro(NumberOfNewLabels1, int);
     itkGetConstMacro(NumberOfNewLabels1, int);
-    GGO_DefineOption(new1, SetNumberOfNewLabels1, int);
 
     // Step 2
     itkSetMacro(DecomposeAndReconstructDuringSecondStep, bool);
     itkGetConstMacro(DecomposeAndReconstructDuringSecondStep, bool);
     itkBooleanMacro(DecomposeAndReconstructDuringSecondStep);
-    GGO_DefineOption_Flag(erode2, SetDecomposeAndReconstructDuringSecondStep);
 
     itkSetMacro(Radius2, InternalImageSizeType);
     itkGetConstMacro(Radius2, InternalImageSizeType);
-    GGO_DefineOption_Vector(radius2, SetRadius2, InternalImageSizeType, ImageDimension, true)
 
     itkSetMacro(MaximumNumberOfLabels2, int);
     itkGetConstMacro(MaximumNumberOfLabels2, int);
-    GGO_DefineOption(max2, SetMaximumNumberOfLabels2, int);
 
     itkSetMacro(NumberOfNewLabels2, int);
     itkGetConstMacro(NumberOfNewLabels2, int);
-    GGO_DefineOption(new2, SetNumberOfNewLabels2, int);
 
     // Step 3
     itkSetMacro(FirstKeep, int);
     itkGetConstMacro(FirstKeep, int);
-    GGO_DefineOption(firstKeep, SetFirstKeep, int);
 
     itkSetMacro(LastKeep, int);
     itkGetConstMacro(LastKeep, int);
-    GGO_DefineOption(lastKeep, SetLastKeep, int);
 
     // Step 4
     itkSetMacro(FinalOpenClose, bool);
     itkGetConstMacro(FinalOpenClose, bool);
     itkBooleanMacro(FinalOpenClose);
-    GGO_DefineOption_Flag(openClose, SetFinalOpenClose);
 
     // Step 4
     itkSetMacro(AutoCrop, bool);
     itkGetConstMacro(AutoCrop, bool);
     itkBooleanMacro(AutoCrop);
-    GGO_DefineOption_Flag(noAutoCrop, SetAutoCrop);
 
   protected:
     ExtractPatientFilter();
@@ -183,6 +167,7 @@ namespace clitk {
     bool m_DecomposeAndReconstructDuringFirstStep;
     bool m_DecomposeAndReconstructDuringSecondStep;
     bool m_FinalOpenClose;
+    unsigned  m_PrimaryOpeningRadius;
     InternalImageSizeType m_Radius1;
     InternalImageSizeType m_Radius2;
     int m_MaximumNumberOfLabels1;