#include "clitkFilterBase.h"
#include "clitkFilterWithAnatomicalFeatureDatabaseManagement.h"
+#include "clitkSegmentationUtils.h"
namespace clitk {
void SetInput(const TInputImageType * image);
itkSetMacro(OutputPatientFilename, std::string);
itkGetMacro(OutputPatientFilename, std::string);
- GGO_DefineOption(output, SetOutputPatientFilename, std::string);
-
- // Set all options at a time
- template<class ArgsInfoType>
- void SetArgsInfo(ArgsInfoType arg);
// Step 1
itkSetMacro(UpperThreshold, InputImagePixelType);
itkGetMacro(UpperThreshold, InputImagePixelType);
- GGO_DefineOption(upper, SetUpperThreshold, InputImagePixelType);
itkSetMacro(LowerThreshold, InputImagePixelType);
itkGetMacro(LowerThreshold, InputImagePixelType);
- itkSetMacro(UseLowerThreshold, bool);
+ itkSetMacro(UseLowerThreshold, bool);
+ itkGetMacro(PrimaryOpeningRadius, unsigned int);
+ itkSetMacro(PrimaryOpeningRadius, unsigned int);
itkGetConstMacro(UseLowerThreshold, bool);
itkBooleanMacro(UseLowerThreshold);
- GGO_DefineOption_WithTest(lower, SetLowerThreshold, InputImagePixelType, UseLowerThreshold);
// Step 2
itkSetMacro(DecomposeAndReconstructDuringFirstStep, bool);
itkGetConstMacro(DecomposeAndReconstructDuringFirstStep, bool);
itkBooleanMacro(DecomposeAndReconstructDuringFirstStep);
- GGO_DefineOption_Flag(erode1, SetDecomposeAndReconstructDuringFirstStep);
itkSetMacro(Radius1, InternalImageSizeType);
itkGetConstMacro(Radius1, InternalImageSizeType);
- GGO_DefineOption_Vector(radius1, SetRadius1, InternalImageSizeType, ImageDimension, true);
itkSetMacro(MaximumNumberOfLabels1, int);
itkGetConstMacro(MaximumNumberOfLabels1, int);
- GGO_DefineOption(max1, SetMaximumNumberOfLabels1, int);
itkSetMacro(NumberOfNewLabels1, int);
itkGetConstMacro(NumberOfNewLabels1, int);
- GGO_DefineOption(new1, SetNumberOfNewLabels1, int);
// Step 2
itkSetMacro(DecomposeAndReconstructDuringSecondStep, bool);
itkGetConstMacro(DecomposeAndReconstructDuringSecondStep, bool);
itkBooleanMacro(DecomposeAndReconstructDuringSecondStep);
- GGO_DefineOption_Flag(erode2, SetDecomposeAndReconstructDuringSecondStep);
itkSetMacro(Radius2, InternalImageSizeType);
itkGetConstMacro(Radius2, InternalImageSizeType);
- GGO_DefineOption_Vector(radius2, SetRadius2, InternalImageSizeType, ImageDimension, true)
itkSetMacro(MaximumNumberOfLabels2, int);
itkGetConstMacro(MaximumNumberOfLabels2, int);
- GGO_DefineOption(max2, SetMaximumNumberOfLabels2, int);
itkSetMacro(NumberOfNewLabels2, int);
itkGetConstMacro(NumberOfNewLabels2, int);
- GGO_DefineOption(new2, SetNumberOfNewLabels2, int);
// Step 3
itkSetMacro(FirstKeep, int);
itkGetConstMacro(FirstKeep, int);
- GGO_DefineOption(firstKeep, SetFirstKeep, int);
itkSetMacro(LastKeep, int);
itkGetConstMacro(LastKeep, int);
- GGO_DefineOption(lastKeep, SetLastKeep, int);
// Step 4
itkSetMacro(FinalOpenClose, bool);
itkGetConstMacro(FinalOpenClose, bool);
itkBooleanMacro(FinalOpenClose);
- GGO_DefineOption_Flag(openClose, SetFinalOpenClose);
// Step 4
itkSetMacro(AutoCrop, bool);
itkGetConstMacro(AutoCrop, bool);
itkBooleanMacro(AutoCrop);
- GGO_DefineOption_Flag(noAutoCrop, SetAutoCrop);
protected:
ExtractPatientFilter();
bool m_DecomposeAndReconstructDuringFirstStep;
bool m_DecomposeAndReconstructDuringSecondStep;
bool m_FinalOpenClose;
+ unsigned m_PrimaryOpeningRadius;
InternalImageSizeType m_Radius1;
InternalImageSizeType m_Radius2;
int m_MaximumNumberOfLabels1;