changes in license header

[clitk.git] / segmentation / clitkExtractPatientGenericFilter.txx

diff --git a/segmentation/clitkExtractPatientGenericFilter.txx b/segmentation/clitkExtractPatientGenericFilter.txx
index e2b2e976e501529c85150a346f0c74523154ae26..a8fbad81e227e2360e1b34b74e71233c85cebdac 100644 (file)
--- a/segmentation/clitkExtractPatientGenericFilter.txx
+++ b/segmentation/clitkExtractPatientGenericFilter.txx
@@ -3,7 +3,7 @@
 
   Authors belong to: 
   - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -14,7 +14,7 @@
 
   - BSD        See included LICENSE.txt file
   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-  ======================================================================-====*/
+  ===========================================================================**/
 
 #include "clitkImageCommon.h"
 
@@ -55,6 +55,59 @@ void clitk::ExtractPatientGenericFilter<ArgsInfoType>::SetArgsInfo(const ArgsInf
 //--------------------------------------------------------------------
 
 
+//--------------------------------------------------------------------
+template<class ArgsInfoType>
+template<class FilterType>
+void 
+clitk::ExtractPatientGenericFilter<ArgsInfoType>::
+SetOptionsFromArgsInfoToFilter(FilterType * f)
+{
+  f->SetVerboseOptionFlag(mArgsInfo.verbose_flag);
+  f->SetVerboseStepFlag(mArgsInfo.verboseStep_flag);
+  f->SetWriteStepFlag(mArgsInfo.writeStep_flag);
+  f->SetVerboseWarningFlag(!mArgsInfo.verboseWarningOff_flag);
+  f->SetVerboseMemoryFlag(mArgsInfo.verboseMemory_flag);
+
+  if (mArgsInfo.afdb_given)
+    f->SetAFDBFilename(mArgsInfo.afdb_arg);  
+  
+  f->SetOutputPatientFilename(mArgsInfo.output_arg);
+
+  f->SetUpperThreshold(mArgsInfo.upper_arg);
+  f->SetLowerThreshold(mArgsInfo.lower_arg);
+
+  f->SetDecomposeAndReconstructDuringFirstStep(mArgsInfo.erode1_flag);
+
+  // Convert to SizeType
+  typename FilterType::InputImageSizeType s;
+  if (mArgsInfo.radius1_given) {
+    ConvertOptionMacro(mArgsInfo.radius1, s, 3, false);
+    f->SetRadius1(s);
+  }
+
+  f->SetMaximumNumberOfLabels1(mArgsInfo.max1_arg);
+  f->SetNumberOfNewLabels1(mArgsInfo.new1_arg);
+
+  f->SetDecomposeAndReconstructDuringSecondStep(mArgsInfo.erode2_flag);
+
+  // Convert to SizeType
+  if (mArgsInfo.radius2_given) {
+    ConvertOptionMacro(mArgsInfo.radius2, s, 3, false);
+    f->SetRadius2(s);
+  }
+
+  f->SetMaximumNumberOfLabels2(mArgsInfo.max2_arg);
+  f->SetNumberOfNewLabels2(mArgsInfo.new2_arg);
+  
+  f->SetFirstKeep(mArgsInfo.firstKeep_arg);
+  f->SetLastKeep(mArgsInfo.lastKeep_arg);
+
+  f->SetFinalOpenClose(mArgsInfo.openClose_flag);
+  f->SetAutoCrop(!mArgsInfo.noAutoCrop_flag);
+}
+//--------------------------------------------------------------------
+
+
 //--------------------------------------------------------------------
 // Update with the number of dimensions and the pixeltype
 //--------------------------------------------------------------------
@@ -76,8 +129,8 @@ void clitk::ExtractPatientGenericFilter<ArgsInfoType>::UpdateWithInputImageType(
   this->SetFilterBase(filter);
     
   // Set global Options 
-  filter->SetArgsInfo(mArgsInfo);
   filter->SetInput(input);
+  SetOptionsFromArgsInfoToFilter<FilterType>(filter);
 
   // Go !
   filter->Update();