Authors belong to:
- University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ - Léon Bérard cancer center http://www.centreleonberard.fr
- CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
This software is distributed WITHOUT ANY WARRANTY; without even
- BSD See included LICENSE.txt file
- CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
- ======================================================================-====*/
+ ===========================================================================**/
#include "clitkImageCommon.h"
void clitk::ExtractPatientGenericFilter<ArgsInfoType>::InitializeImageType()
{
ADD_IMAGE_TYPE(Dim, short);
+ ADD_IMAGE_TYPE(Dim, unsigned short);
+ ADD_IMAGE_TYPE(Dim, float);
// ADD_IMAGE_TYPE(Dim, int);
// ADD_IMAGE_TYPE(Dim, float);
}
void clitk::ExtractPatientGenericFilter<ArgsInfoType>::SetArgsInfo(const ArgsInfoType & a)
{
mArgsInfo=a;
- SetIOVerbose(mArgsInfo.verbose_flag);
+ this->SetIOVerbose(mArgsInfo.verbose_flag);
if (mArgsInfo.imagetypes_flag) this->PrintAvailableImageTypes();
- if (mArgsInfo.input_given) SetInputFilename(mArgsInfo.input_arg);
- if (mArgsInfo.output_given) AddOutputFilename(mArgsInfo.output_arg);
+ if (mArgsInfo.input_given) this->SetInputFilename(mArgsInfo.input_arg);
+ if (mArgsInfo.output_given) this->AddOutputFilename(mArgsInfo.output_arg);
}
//--------------------------------------------------------------------
f->SetVerboseWarningFlag(!mArgsInfo.verboseWarningOff_flag);
f->SetVerboseMemoryFlag(mArgsInfo.verboseMemory_flag);
- f->SetAFDBFilename(mArgsInfo.afdb_arg);
+ if (mArgsInfo.afdb_given)
+ f->SetAFDBFilename(mArgsInfo.afdb_arg);
+
f->SetOutputPatientFilename(mArgsInfo.output_arg);
f->SetUpperThreshold(mArgsInfo.upper_arg);
f->SetLowerThreshold(mArgsInfo.lower_arg);
+ f->SetPrimaryOpeningRadius(mArgsInfo.openingRadius_arg);
f->SetDecomposeAndReconstructDuringFirstStep(mArgsInfo.erode1_flag);