remove tools (now in tests_dav)

[clitk.git] / segmentation / clitkExtractPatientGenericFilter.txx

diff --git a/segmentation/clitkExtractPatientGenericFilter.txx b/segmentation/clitkExtractPatientGenericFilter.txx
index 9435288d1e262519c03ccde50cb0d0fd2b2d8c35..e7d4ebee74565d7dca39e2cd2bef982bb9a161fd 100644 (file)
--- a/segmentation/clitkExtractPatientGenericFilter.txx
+++ b/segmentation/clitkExtractPatientGenericFilter.txx
@@ -3,7 +3,7 @@
 
   Authors belong to: 
   - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -14,7 +14,7 @@
 
   - BSD        See included LICENSE.txt file
   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-  ======================================================================-====*/
+  ===========================================================================**/
 
 #include "clitkImageCommon.h"
 
@@ -68,11 +68,14 @@ SetOptionsFromArgsInfoToFilter(FilterType * f)
   f->SetVerboseWarningFlag(!mArgsInfo.verboseWarningOff_flag);
   f->SetVerboseMemoryFlag(mArgsInfo.verboseMemory_flag);
 
-  f->SetAFDBFilename(mArgsInfo.afdb_arg);  
+  if (mArgsInfo.afdb_given)
+    f->SetAFDBFilename(mArgsInfo.afdb_arg);  
+  
   f->SetOutputPatientFilename(mArgsInfo.output_arg);
 
   f->SetUpperThreshold(mArgsInfo.upper_arg);
   f->SetLowerThreshold(mArgsInfo.lower_arg);
+  f->SetPrimaryOpeningRadius(mArgsInfo.openingRadius_arg);
 
   f->SetDecomposeAndReconstructDuringFirstStep(mArgsInfo.erode1_flag);