some segmentation tools (most from jef)

[clitk.git] / segmentation / clitkFillMaskGenericFilter.h

diff --git a/segmentation/clitkFillMaskGenericFilter.h b/segmentation/clitkFillMaskGenericFilter.h
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+++ b/segmentation/clitkFillMaskGenericFilter.h
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+#ifndef clitkFillMaskGenericFilter_h
+#define clitkFillMaskGenericFilter_h
+
+/* =================================================
+ * @file   clitkFillMaskGenericFilter.h
+ * @author 
+ * @date   
+ * 
+ * @brief 
+ * 
+ ===================================================*/
+
+
+// clitk include
+#include "clitkFillMask_ggo.h"
+#include "clitkImageCommon.h"
+#include "clitkExtractImageFilter.h"
+
+//itk include
+#include "itkLightObject.h"
+#include "itkJoinSeriesImageFilter.h"
+#include "itkBinaryThresholdImageFilter.h"
+#include "itkConnectedComponentImageFilter.h"
+#include "itkRelabelComponentImageFilter.h"
+#include "itkThresholdImageFilter.h"
+#include "itkPermuteAxesImageFilter.h"
+#include "itkExtractImageFilter.h"
+#include "itkCastImageFilter.h"
+
+namespace clitk 
+{
+
+
+  class ITK_EXPORT FillMaskGenericFilter : public itk::LightObject
+  {
+  public:
+    //----------------------------------------
+    // ITK
+    //----------------------------------------
+    typedef FillMaskGenericFilter                   Self;
+    typedef itk::LightObject                   Superclass;
+    typedef itk::SmartPointer<Self>            Pointer;
+    typedef itk::SmartPointer<const Self>      ConstPointer;
+   
+    // Method for creation through the object factory
+    itkNewMacro(Self);  
+
+    // Run-time type information (and related methods)
+    itkTypeMacro( FillMaskGenericFilter, LightObject );
+
+
+    //----------------------------------------
+    // Typedefs
+    //----------------------------------------
+
+
+    //----------------------------------------
+    // Set & Get
+    //----------------------------------------    
+    void SetArgsInfo(const args_info_clitkFillMask & a)
+    {
+      m_ArgsInfo=a;
+      m_Verbose=m_ArgsInfo.verbose_flag;
+      m_InputFileName=m_ArgsInfo.input_arg;
+    }
+    
+    
+    //----------------------------------------  
+    // Update
+    //----------------------------------------  
+    void Update();
+
+  protected:
+
+    //----------------------------------------  
+    // Constructor & Destructor
+    //----------------------------------------  
+    FillMaskGenericFilter();
+    ~FillMaskGenericFilter() {};
+
+    
+    //----------------------------------------  
+    // Templated members
+    //----------------------------------------  
+    template <class PixelType>  void UpdateWithPixelType();
+
+
+    //----------------------------------------  
+    // Data members
+    //----------------------------------------
+    args_info_clitkFillMask m_ArgsInfo;
+    bool m_Verbose;
+    std::string m_InputFileName;
+
+  };
+
+
+} // end namespace clitk
+
+#ifndef ITK_MANUAL_INSTANTIATION
+#include "clitkFillMaskGenericFilter.txx"
+#endif
+
+#endif // #define clitkFillMaskGenericFilter_h