Authors belong to:
- University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ - Léon Bérard cancer center http://www.centreleonberard.fr
- CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
This software is distributed WITHOUT ANY WARRANTY; without even
- BSD See included LICENSE.txt file
- CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
- ======================================================================-====*/
+ ===========================================================================**/
// clitk
#include "clitkFilterWithAnatomicalFeatureDatabaseManagement.h"
{
m_AFDB = NULL;
SetAFDBFilename("default.afdb");
+ SetAFDBPath("./");
+ DisplayUsedStructuresOnlyFlagOff();
}
//--------------------------------------------------------------------
void clitk::FilterWithAnatomicalFeatureDatabaseManagement::LoadAFDB()
{
GetAFDB()->SetFilename(GetAFDBFilename());
+ GetAFDB()->SetPath(GetAFDBPath());
try {
GetAFDB()->Load();
} catch (clitk::ExceptionObject e) {
- std::cout << "Could not read '" << GetAFDBFilename() << "', create one AFDB." << std::endl;
+ std::cout << "******* Could not read '" << GetAFDBFilename() << "', create one AFDB. ********" << std::endl;
GetAFDB();
}
}
//--------------------------------------------------------------------
-clitk::AnatomicalFeatureDatabase * clitk::FilterWithAnatomicalFeatureDatabaseManagement::GetAFDB()
+clitk::AnatomicalFeatureDatabase::Pointer clitk::FilterWithAnatomicalFeatureDatabaseManagement::GetAFDB()
{
- if (m_AFDB == NULL) {
- m_AFDB = new clitk::AnatomicalFeatureDatabase;
+ if (!m_AFDB) {
+ m_AFDB = clitk::AnatomicalFeatureDatabase::New();
}
return m_AFDB;
}
//--------------------------------------------------------------------
+
+
+//--------------------------------------------------------------------
+void clitk::FilterWithAnatomicalFeatureDatabaseManagement::
+AddUsedStructures(std::string station, std::string structure)
+{
+ if (!GetDisplayUsedStructuresOnlyFlag()) return;
+ std::cout << station << "\t" << structure;
+ bool founded = true;
+ bool tag = GetAFDB()->TagExist(structure);
+ if (tag) {
+ typedef itk::Image<uchar, 3> ImageType;
+ founded = GetAFDB()->CheckImage<ImageType>(structure);
+ if (!founded) {
+ std::cout << " \t Image not exist in DB ";
+ std::cout << "<" << GetAFDB()->GetTagValue(structure) << "> ";
+ }
+ }
+ if (!tag) std::cout << " \t Tag not found in DB";
+ std::cout << std::endl;
+}
+//--------------------------------------------------------------------