Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

[clitk.git] / segmentation / clitkMotionMask.ggo

diff --git a/segmentation/clitkMotionMask.ggo b/segmentation/clitkMotionMask.ggo
old mode 100755 (executable)
new mode 100644 (file)
index 9d059b7..b9e9d1c
--- a/segmentation/clitkMotionMask.ggo
+++ b/segmentation/clitkMotionMask.ggo
@@ -1,7 +1,7 @@
 #File clitkMotionMask.ggo
-Package "clitkMotionMask"
+package "clitkMotionMask"
 version "1.0"
-purpose "From an input CT image (HU), extract feature images (air, ribs and lungs) and calculate the motion mask using levelsets"
+purpose "From an input CT image (HU), extract feature images (air, ribs and lungs) and calculate the motion mask using levelsets, Vandemeulebroucke2010, ICCR. More elaborate methods for extracting the feature images have been incude in clitkExtract*, with *=Lungs,Bones,Patient."
 
 option "config"                -       "Config file"                     string        no
 option "verbose"       v       "Verbose"                         flag          off
@@ -32,9 +32,12 @@ option "writeFeature"                -       "Write the combined feature image"                      string  no
 section "Ellipsoide initialization"
 
 option "ellips"        -       "Input ellipsoide image (=1, at half resolution)"                                          string       no
-option "offset"        -       "Offset for ellips center from body center of gravity (default= 0,-50,0 mm)"       double       no      multiple
-option         "axes"          -       "Half axes of the ellips (default= 100,30,150)"                                    double       no      multiple
 option  "writeEllips"  -       "Write the initial ellipsoide image"                    string  no  
+option "writeDistMap"   - "Write the distance map"      string  no  
+#defgroup "EllipseParams" groupdesc="an option of this group is required" required
+option  "ellipseAutoDetect"  - "Auto-detect offset and axes of initial ellipse"          flag  off  
+option  "offset"  - "Offset for ellips center from body center of gravity (default= 0,-50,0 mm)"       double no  multiple
+option  "axes"    - "Half axes of the ellips (default= 100,30,150)"            double   no  multiple
 
 
 section "Ellipsoide growing"