#File clitkMotionMask.ggo
-Package "clitkMotionMask"
+package "clitkMotionMask"
version "1.0"
-purpose "From an input CT image (HU), extract feature images (air, ribs and lungs) and calculate the motion mask using levelsets"
+purpose "From an input CT image (HU), extract feature images (air, ribs and lungs) and calculate the motion mask using levelsets, Vandemeulebroucke2010, ICCR. More elaborate methods for extracting the feature images have been incude in clitkExtract*, with *=Lungs,Bones,Patient."
option "config" - "Config file" string no
option "verbose" v "Verbose" flag off
section "Ellipsoide initialization"
option "ellips" - "Input ellipsoide image (=1, at half resolution)" string no
-option "offset" - "Offset for ellips center from body center of gravity (default= 0,-50,0 mm)" double no multiple
-option "axes" - "Half axes of the ellips (default= 100,30,150)" double no multiple
option "writeEllips" - "Write the initial ellipsoide image" string no
+option "writeDistMap" - "Write the distance map" string no
+#defgroup "EllipseParams" groupdesc="an option of this group is required" required
+option "ellipseAutoDetect" - "Auto-detect offset and axes of initial ellipse" flag off
+option "offset" - "Offset for ellips center from body center of gravity (default= 0,-50,0 mm)" double no multiple
+option "axes" - "Half axes of the ellips (default= 100,30,150)" double no multiple
section "Ellipsoide growing"