remove duplicated file

[clitk.git] / segmentation / clitkMotionMaskGenericFilter.txx

diff --git a/segmentation/clitkMotionMaskGenericFilter.txx b/segmentation/clitkMotionMaskGenericFilter.txx
index 414a2f69042a5494b2355472c5785f3d31604efd..56fadac84f5e977f016677a0cd68bce42470e62c 100644 (file)
--- a/segmentation/clitkMotionMaskGenericFilter.txx
+++ b/segmentation/clitkMotionMaskGenericFilter.txx
@@ -377,6 +377,8 @@ MotionMaskGenericFilter::GetLungsImage(typename itk::Image<PixelType, Dimension>
     connectFilter->SetBackgroundValue(0);
     connectFilter->SetFullyConnected(true);
     if (m_Verbose) std::cout<<"Labeling the connected components..."<<std::endl;
+    connectFilter->Update();
+    if (m_Verbose) std::cout<<"found "<< connectFilter->GetObjectCount() << std::endl;
 
     //---------------------------------
     // Sort the labels according to size
@@ -384,7 +386,7 @@ MotionMaskGenericFilter::GetLungsImage(typename itk::Image<PixelType, Dimension>
     typename RelabelFilterType::Pointer relabelFilter=RelabelFilterType::New();
     relabelFilter->SetInput(connectFilter->GetOutput());
     if (m_Verbose) std::cout<<"Sorting the labels..."<<std::endl;
-    // writeImage<InternalImageType> (relabelFilter->GetOutput(), "/home/jef/tmp/labels.mhd");
+    // writeImage<InternalImageType> (relabelFilter->GetOutput(), "/home/vdelmon/tmp/labels.mhd");
 
     //---------------------------------
     // Keep the label
@@ -944,6 +946,10 @@ MotionMaskGenericFilter::UpdateWithDimAndPixelType()
     distanceMapImageFilter->SetInsideIsPositive(false);
     if (m_Verbose) std::cout<<"Calculating the distance map..."<<std::endl;
     distanceMapImageFilter->Update();
+    if (m_ArgsInfo.writeDistMap_given) {
+      writeImage<LevelSetImageType>(distanceMapImageFilter->GetOutput(), m_ArgsInfo.writeDistMap_arg, m_Verbose);
+      
+    }
 
     //---------------------------------
     // Grow while monitoring detection point