First trial for seg

[clitk.git] / segmentation / clitkRegionGrowing.ggo

diff --git a/segmentation/clitkRegionGrowing.ggo b/segmentation/clitkRegionGrowing.ggo
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-#File clitkRegionGrowing.ggo
-package "clitkRegionGrowing"
-version "1.0"
-purpose "Region growing from a seed point using various types of conditions to control the growing"
-
-option "config"                -       "Config file"                     string        no
-option "verbose"       v       "Verbose"                         flag          off
-
-section "I/O"
-
-option "input"         i       "Input image filename"            string        yes
-option "output"        o       "Output image filename"           string        yes
-
-
-section "Parameters"
-
-option "type"          t       "Region growing filter type: 0=threshold , 1=neighborhood-threshold , 2=confidence , 3= locally-adaptive-threshold, 4= explosion-controlled-threshold" int      no      default="0"
-option "lower"         l       "1,2,3,4: Lower threshold value"                  double        no      default="0"
-option "upper"         u       "1,2,3,4: Upper threshold value"                  double        no      default="1"
-option "maxUpper"      -       "4: Maximum upper threshold value"                double        no      default="2000"
-option "minLower"      -       "4: Minimum lower threshold value"                double        no      default="-1000"
-option "step"          -       "4: Threshold step size"                          double        no      default="64.0"
-option "minStep"       -       "4: Minimum threshold step size"                  double        no      default="1"
-option "adaptLower"    -       "3,4: (locally) adapt lower thresholding"         flag          off
-option "adaptUpper"    -       "3,4: (locally) adapt upper thresholding"         flag          off
-option "multiplier"            m       "2-4: (2-3) accept if within mean+-mutiplier*SD, (4) explosion if size increases multiplier times"      double  no      default="2.0"
-option "seed"          s       "Seed index postion (in voxels)"                  int           multiple        no      default="0"     
-option "pad"           p       "The replace padding value"                       double        no              default="1.0"   
-option "radius"        r       "1-3: The radius of the neighborhood"             int           no              multiple        default="1"
-option "maxSD"         -       "3: Limit to SD"                                  double        no       
-option "full"          -       "4: use full connectivity (not implemented yet)"  flag          off      
-option "iter"          -       "2: Iterations"                                   int           no      default="5"
-