The lower and upper options can be tuned for all type of region growing algorithm

[clitk.git] / segmentation / clitkRegionGrowing.ggo

diff --git a/segmentation/clitkRegionGrowing.ggo b/segmentation/clitkRegionGrowing.ggo
old mode 100755 (executable)
new mode 100644 (file)
index 59cb77c..c55b2a1
--- a/segmentation/clitkRegionGrowing.ggo
+++ b/segmentation/clitkRegionGrowing.ggo
@@ -15,8 +15,8 @@ option "output"       o       "Output image filename"           string        yes
 section "Parameters"
 
 option "type"          t       "Region growing filter type: 0=threshold , 1=neighborhood-threshold , 2=confidence , 3= locally-adaptive-threshold, 4= explosion-controlled-threshold" int      no      default="0"
-option "lower"         l       "1,2,3,4: Lower threshold value"                  double        no      default="0"
-option "upper"         u       "1,2,3,4: Upper threshold value"                  double        no      default="1"
+option "lower"         l       "Lower threshold value"           double        no      default="310"
+option "upper"         u       "Upper threshold value"           double        no      default="4000"
 option "maxUpper"      -       "4: Maximum upper threshold value"                double        no      default="2000"
 option "minLower"      -       "4: Minimum lower threshold value"                double        no      default="-1000"
 option "step"          -       "4: Threshold step size"                          double        no      default="64.0"
@@ -25,6 +25,7 @@ option "adaptLower"   -       "3,4: (locally) adapt lower thresholding"         flag          off
 option "adaptUpper"    -       "3,4: (locally) adapt upper thresholding"         flag          off
 option "multiplier"            m       "2-4: (2-3) accept if within mean+-mutiplier*SD, (4) explosion if size increases multiplier times"      double  no      default="2.0"
 option "seed"          s       "Seed index postion (in voxels)"                  int           multiple        no      default="0"     
+option "seedRadius"            -       "Radius used for seed dilatation(in voxel)"       int           multiple        no      default="0"     
 option "pad"           p       "The replace padding value"                       double        no              default="1.0"   
 option "radius"        r       "1-3: The radius of the neighborhood"             int           no              multiple        default="1"
 option "maxSD"         -       "3: Limit to SD"                                  double        no