for(uint i=0; i<mArgsInfoList.size(); i++) {
// clitk::PrintMemory(true, "Start");
- std::string text = "["+s+"] limits ";
+ // remove _S in station name
+ std::string sname = s;
+ clitk::findAndReplace<std::string>(sname, "_S", " ");
+ std::string text = "["+sname+"] ";
if (mArgsInfoList[i].orientation_given) text += std::string(mArgsInfoList[i].orientation_arg[0])+" ";
else text = text+"("+toString(mArgsInfoList[i].angle1_arg)+" "+
toString(mArgsInfoList[i].angle2_arg)+" "+
(mArgsInfoList[i].inverse_flag?"true":"false")+") ";
text = text+mArgsInfoList[i].object_arg+" "+toString(mArgsInfoList[i].threshold_arg);
if (mArgsInfoList[i].sliceBySlice_flag) {
- text += " slice by slice";
+ text += " SbS";
}
else text += " 3D";
- text += " spacing=" + toString(mArgsInfoList[i].spacing_arg);
+ text += " sp=" + toString(mArgsInfoList[i].spacing_arg)+" ";
- StartNewStep(text);
+ StartNewStep(text, false); // no endl
typename RelPosFilterType::Pointer relPosFilter;
// Is it slice by slice or 3D ?
f->SetUniqueConnectedComponentBySliceFlag(mArgsInfoList[i].uniqueCCL_flag);
f->SetObjectCCLSelectionFlag(mArgsInfoList[i].uniqueObjectCCL_flag);
f->IgnoreEmptySliceObjectFlagOn();
+ f->SetVerboseSlicesFlag(mArgsInfoList[i].verboseSlices_flag);
//f->SetObjectCCLSelectionDimension(0);
//f->SetObjectCCLSelectionDirection(-1);
//f->SetAutoCropFlag(false);
filter->SetInput(0, m_working_input);
filter->SetInput(1, m_reference);
filter->Update();
- std::cout << std::endl;
}
-
+ std::cout << std::endl;
}
}
//--------------------------------------------------------------------
ImagePointer object = GetAFDB()->template GetImage<ImageType>(options.object_arg);
filter->SetInputObject(object);
filter->WriteStepFlagOff();
+ filter->SetRadius(options.radius_arg);
+ if (options.writeStep_flag) filter->WriteStepFlagOn();
filter->SetVerboseImageSizeFlag(GetVerboseImageSizeFlag());
filter->SetFuzzyThreshold(options.threshold_arg);
filter->SetInverseOrientationFlag(options.inverse_flag); // MUST BE BEFORE AddOrientationTypeString
+ filter->SetFastFlag(options.fastFlag_flag);
if (options.orientation_given == 1) {
for(uint i=0; i<options.orientation_given; i++)