namespace creaImageIO
{
bool SimpleView::readFile( std::vector<std::string> i_filenames, // in information names
- std::vector<std::string> i_attr, // in information attributes names
+ std::vector<std::string> i_attr, // in information attributes names
std::vector<std::map <std::string , std::string> > &i_imgAttr, // out information attributes names-values
- std::vector<vtkImageData *> &i_img) // out information vtkImageData
+ std::vector<vtkImageData *> &i_img) // out information vtkImageData
{
-printf("EED SimpleView::readFile 0\n");
//Mosaic Attribute for Simens
i_attr.push_back("D0019_100a"); // Number of images in mosaic (Simens)
//EED borrame
// i_img.push_back( mReader->ReadImage( (*it).c_str() ) );
-printf("EED SimpleView::readFile 1\n");
// EED 18 octt 2014
std::map <std::string , std::string>::iterator itMapAttr;
if ( itMapAttr!=mapAttr.end() ) numberOfImagesInMosaicStr = itMapAttr->second;
// std::string numberOfImagesInMosaicStr = mapAttr.find("D0019_100a")->second;
-printf("EED SimpleView::readFile 1.1\n");
itMapAttr = mapAttr.find("D0018_0088");
if ( itMapAttr!=mapAttr.end() ) spaceBetweenSliceStr = itMapAttr->second;
// std::string spaceBetweenSliceStr = mapAttr.find("D0018_0088")->second;
-printf("EED SimpleView::readFile 1.2\n");
if (numberOfImagesInMosaicStr=="")
{
-printf("EED SimpleView::readFile 2\n");
i_img.push_back( mReader->ReadImage( (*it).c_str() ) );
} else {
-printf("EED SimpleView::readFile 3\n");
numberOfImagesInMosaic = atoi(numberOfImagesInMosaicStr.c_str());
spcZ = atoi(spaceBetweenSliceStr.c_str());
tmpImg1 = mReader->ReadImage( (*it).c_str() ) ;
} // if
} // for
delete mReader;
-printf("EED SimpleView::readFile 4\n");
return bfinal;
}
}
return bresult;
}
+
+
+ vtkImageData* SimpleView::getVolumeSelected( std::vector<vtkImageData*> lstImages)
+ {
+ vtkImageData *result;
+
+// creaImageIO::WxSimpleDlg dlg(0,crea::std2wx(bbGetInputTitle()),"localdatabase_Descriptor.dscp","Local Database");
+// dlg.SetAttrDicomTags( bbGetInputDicomTags() );
+// dlg.ShowModal();
+// bbSetOutputDicomInfo( dlg.getDicomInfoImagesSelected() );
+
+ if (lstImages.size()!=0){
+// bbSetOutputFileName( std::string( dlg.getInfoImage().mb_str() ) );
+ if(lstImages.size() ==1)
+ {
+ result = lstImages[0] ;
+ } else {
+ // FCY: it will be a big problem if we have several kind of data in the same folder.
+ // creation of a huge vtkImageData!!!!
+ vtkImageData* first = lstImages[0];
+ int dim[3];
+ first->GetDimensions(dim);
+ if (dim[2]==1)
+ {
+ vtkImageData *out = vtkImageData::New();
+ int ext[6];
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
+ first->GetWholeExtent(ext);
+#else
+ first->GetExtent(ext);
+#endif
+ if(ext[5] == 0)
+ {
+ ext[5] = lstImages.size()-1;
+ } else {
+ ext[5] = ext[5] * lstImages.size()-1; // to deal with multiframes
+ } // ext
+ out->SetExtent(ext);
+ double spac[3];
+ first->GetDimensions(dim);
+ first->GetSpacing(spac);
+ if (spac[0]==spac[1])
+ {
+ spac[2]=spac[0];
+ }
+ out->SetSpacing(spac);
+ out->SetDimensions(dim[0], dim[1], lstImages.size() );
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
+
+ out->SetScalarType(first->GetScalarType());
+ out->SetNumberOfScalarComponents(first->GetNumberOfScalarComponents());
+ out->AllocateScalars();
+ out->Update();
+#else
+ out->AllocateScalars(first->GetScalarType(),first->GetNumberOfScalarComponents());
+#endif
+
+
+ unsigned long imsize = dim[0] * dim[1];
+ imsize = imsize * dim[2]; // deal with multiframes here
+ // differents formats char , short, etc...
+ // differents components 1..3 ex. jpg ->RGB 3
+ imsize = imsize * first->GetScalarSize() * first->GetNumberOfScalarComponents();
+ int slice,sizeImageVector=lstImages.size();
+ for (slice=0 ; slice<sizeImageVector ; slice++)
+ {
+ vtkImageData *img = lstImages[slice];
+ memcpy(out->GetScalarPointer(0,0,slice), img->GetScalarPointer(0,0,0), imsize);
+ //img->Delete();
+ } // for slice
+ out->Modified();
+//EED This is NOT working. The iteration over the pointer vtkImageData
+// int slice=0;
+// std::vector<vtkImageData*>::iterator it;
+// for (it=dlg.getImagesSelected().begin(); it!=dlg.getImagesSelected().end(); ++it)
+// {
+// memcpy(out->GetScalarPointer(0,0,slice), (*it)->GetScalarPointer(0,0,0), imsize);
+// slice++;
+// }
+// //for (it=dlg.getImagesSelected().begin(); it!=dlg.getImagesSelected().end(); ++it)
+// //{
+// // (*it)->Delete();
+// //}
+
+ result =out;
+
+ } else {
+ result = first;
+ } // dim
+ } // if getImagesSelected size
+ } else {
+ result = NULL;
+ } // getImagesSelected().size()!=0
+ result->Modified();
+ return result;
+ }
+
+
}
git://git.creatis.insa-lyon.fr / creaImageIO.git / blobdiff