Program: gdcm
Module: $RCSfile: gdcmDicomDir.cxx,v $
Language: C++
- Date: $Date: 2005/10/25 14:52:33 $
- Version: $Revision: 1.167 $
+ Date: $Date: 2005/11/29 12:48:45 $
+ Version: $Revision: 1.176 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
#include "gdcmSeqEntry.h"
#include "gdcmSQItem.h"
#include "gdcmDataEntry.h"
+#include "gdcmCommandManager.h"
#include <fstream>
#include <string>
* \brief Constructor : creates an empty DicomDir
*/
DicomDir::DicomDir()
- :Document( )
{
Initialize(); // sets all private fields to NULL
ParseDir = false;
*/
DicomDir::~DicomDir()
{
- SetStartMethod(NULL,NULL,NULL);
- SetProgressMethod(NULL,NULL,NULL);
- SetEndMethod(NULL,NULL,NULL);
-
ClearPatient();
if ( MetaElems )
{
return DoTheLoadingJob( );
}
-#ifndef GDCM_LEGACY_REMOVE
-/* *
- * \ brief Loader. (DEPRECATED : kept not to break the API)
- * @ param fileName file to be open for parsing
- * @ return false if file cannot be open or no swap info was found,
- * or no tag was found.
- * @ deprecated use SetFileName(n) + Load() instead
- */
-bool DicomDir::Load(std::string const &fileName )
-{
- SetFileName(fileName);
- return Load();
-}
-
-/// DEPRECATED : use SetDirectoryName(dname) instead
-/* *
- * \brief Loader. (DEPRECATED : kept not to break the API)
- * @param paseDir Parse Dir
- * @deprecated use SetDirectoryName(dname) instead
- */
-void DicomDir::SetParseDir(bool parseDir)
-{
- ParseDir = parseDir;
-}
-#endif
-
/**
* \brief Does the Loading Job (internal use only)
* @return false if file cannot be open or no swap info was found,
{
// user passed '.' as Name
// we get current directory name
- char dummy[1000];
- getcwd(dummy, (size_t)1000);
- SetFileName( dummy ); // will be converted into a string
+ char buf[2048];
+ const char *cwd = getcwd(buf, 2048);
+ if( cwd )
+ {
+ SetFileName( buf ); // will be converted into a string
+ }
+ else
+ {
+ gdcmErrorMacro( "Path was too long to fit on 2048 bytes" );
+ }
}
NewMeta();
- gdcmWarningMacro( "Parse directory and create the DicomDir : "
+ gdcmDebugMacro( "Parse directory and create the DicomDir : "
<< GetFileName() );
ParseDirectory();
}
{
if ( Filetype == Unknown )
{
- gdcmWarningMacro( "Wrong filetype");
+ gdcmErrorMacro( "Wrong filetype for " << GetFileName());
return false;
}
if ( !MetaElems )
CreateDicomDir();
}
-void DicomDir::SetStartMethod( DicomDir::Method *method, void *arg )
-{
- SetStartMethod(method,arg,NULL);
-}
-
-void DicomDir::SetProgressMethod( DicomDir::Method *method, void *arg )
-{
- SetProgressMethod(method,arg,NULL);
-}
-
-void DicomDir::SetEndMethod( DicomDir::Method *method, void *arg )
-{
- SetEndMethod(method,arg,NULL);
-}
-
-/**
- * \brief Set the start method to call when the parsing of the
- * directory starts.
- * @param method Method to call
- * @param arg Argument to pass to the method
- * @param argDelete Argument
- * \warning In python : the arg parameter isn't considered
- */
-void DicomDir::SetStartMethod( DicomDir::Method *method, void *arg,
- DicomDir::Method *argDelete )
-{
- if ( StartArg && StartMethodArgDelete )
- {
- StartMethodArgDelete( StartArg );
- }
-
- StartMethod = method;
- StartArg = arg;
- StartMethodArgDelete = argDelete;
-}
-
-
-/**
- * \brief Set the progress method to call when the parsing of the
- * directory progress
- * @param method Method to call
- * @param arg Argument to pass to the method
- * @param argDelete Argument
- * \warning In python : the arg parameter isn't considered
- */
-void DicomDir::SetProgressMethod( DicomDir::Method *method, void *arg,
- DicomDir::Method *argDelete )
-{
- if ( ProgressArg && ProgressMethodArgDelete )
- {
- ProgressMethodArgDelete( ProgressArg );
- }
-
- ProgressMethod = method;
- ProgressArg = arg;
- ProgressMethodArgDelete = argDelete;
-}
-
-/**
- * \brief Set the end method to call when the parsing of the directory ends
- * @param method Method to call
- * @param arg Argument to pass to the method
- * @param argDelete Argument
- * \warning In python : the arg parameter isn't considered
- */
-void DicomDir::SetEndMethod( DicomDir::Method *method, void *arg,
- DicomDir::Method *argDelete )
-{
- if ( EndArg && EndMethodArgDelete )
- {
- EndMethodArgDelete( EndArg );
- }
-
- EndMethod = method;
- EndArg = arg;
- EndMethodArgDelete = argDelete;
-}
-
-/**
- * \brief Set the method to delete the argument
- * The argument is destroyed when the method is changed or when the
- * class is destroyed
- * @param method Method to call to delete the argument
- */
-void DicomDir::SetStartMethodArgDelete( DicomDir::Method *method )
-{
- StartMethodArgDelete = method;
-}
-
-/**
- * \brief Set the method to delete the argument
- * The argument is destroyed when the method is changed or when the
- * class is destroyed
- * @param method Method to call to delete the argument
- */
-void DicomDir::SetProgressMethodArgDelete( DicomDir::Method *method )
-{
- ProgressMethodArgDelete = method;
-}
-
-/**
- * \brief Set the method to delete the argument
- * The argument is destroyed when the method is changed or when
- * the class is destroyed
- * @param method Method to call to delete the argument
- */
-void DicomDir::SetEndMethodArgDelete( DicomDir::Method *method )
-{
- EndMethodArgDelete = method;
-}
-
/**
* \brief writes on disc a DICOMDIR
* \ warning does NOT add the missing elements in the header :
bool DicomDir::Write(std::string const &fileName)
{
int i;
- uint16_t sq[4] = { 0x0004, 0x1220, 0xffff, 0xffff };
+ uint16_t sq[6] = { 0x0004, 0x1220, 0x5153, 0x0000, 0xffff, 0xffff };
uint16_t sqt[4]= { 0xfffe, 0xe0dd, 0xffff, 0xffff };
std::ofstream *fp = new std::ofstream(fileName.c_str(),
ptrMeta->WriteContent(fp, ExplicitVR);
// force writing 0004|1220 [SQ ], that CANNOT exist within DicomDirMeta
- for(i=0;i<4;++i)
+ for(i=0;i<6;++i)
{
binary_write(*fp, sq[i]);
}
return true;
}
+/**
+ * \brief Copies all the attributes from an other DocEntrySet
+ * @param set entry to copy from
+ * @remarks The contained DocEntries a not copied, only referenced
+ */
+void DicomDir::Copy(DocEntrySet *set)
+{
+ // Remove all previous childs
+ ClearPatient();
+
+ Document::Copy(set);
+
+ DicomDir *dd = dynamic_cast<DicomDir *>(set);
+ if( dd )
+ {
+ if(MetaElems)
+ MetaElems->Unregister();
+ MetaElems = dd->MetaElems;
+ if(MetaElems)
+ MetaElems->Register();
+
+ Patients = dd->Patients;
+ for(ItPatient = Patients.begin();ItPatient != Patients.end();++ItPatient)
+ (*ItPatient)->Register();
+ }
+}
+
//-----------------------------------------------------------------------------
// Protected
/**
}
f = File::New( );
- f->SetLoadMode(LoadMode); // we allow user not to load Sequences, or Shadow
- // groups, or ......
+ f->SetLoadMode(LoadMode); // we allow user not to load Sequences,
+ // or Shadow groups, or ......
f->SetFileName( it->c_str() );
f->Load( );
{
// Add the file to the chained list:
list.push_back(f);
- gdcmWarningMacro( "Readable " << it->c_str() );
+ gdcmDebugMacro( "Readable " << it->c_str() );
}
else
{
{
Progress = 0.0f;
Abort = false;
- if ( StartMethod )
- {
- StartMethod( StartArg );
- }
+ CommandManager::ExecuteCommand(this,CMD_STARTPROGRESS);
}
/**
*/
void DicomDir::CallProgressMethod()
{
- if ( ProgressMethod )
- {
- ProgressMethod( ProgressArg );
- }
+ CommandManager::ExecuteCommand(this,CMD_PROGRESS);
}
/**
void DicomDir::CallEndMethod()
{
Progress = 1.0f;
- if ( EndMethod )
- {
- EndMethod( EndArg );
- }
+ CommandManager::ExecuteCommand(this,CMD_ENDPROGRESS);
}
//-----------------------------------------------------------------------------
*/
void DicomDir::Initialize()
{
- StartMethod = NULL;
- ProgressMethod = NULL;
- EndMethod = NULL;
- StartMethodArgDelete = NULL;
- ProgressMethodArgDelete = NULL;
- EndMethodArgDelete = NULL;
- StartArg = NULL;
- ProgressArg = NULL;
- EndArg = NULL;
-
Progress = 0.0;
Abort = false;
{
// It was neither a 'PATIENT', nor a 'STUDY', nor a 'SERIE',
// nor an 'IMAGE' SQItem. Skip to next item.
- gdcmWarningMacro( " -------------------------------------------"
+ gdcmDebugMacro( " -------------------------------------------"
<< "a non PATIENT/STUDY/SERIE/IMAGE SQItem was found : "
<< v);
continue;
}
if ( si )
- si->MoveObject(tmpSI); // New code : Copies the List
+ si->Copy(tmpSI);
tmpSI=s->GetNextSQItem();
}
default:
return;
}
+
+ // FIXME : troubles found when it's a SeqEntry
+
// removed all the seems-to-be-useless stuff about Referenced Image Sequence
// to avoid further troubles
// imageElem 0008 1140 "" // Referenced Image Sequence
// imageElem 0008 1155 "" // Referenced SOP Instance UID : to be set/forged later
// imageElem fffe e00d "" // Item delimitation : length to be set to ZERO later
- // FIXME : troubles found when it's a SeqEntry
-
+ std::string referencedVal;
// for all the relevant elements found in their own spot of the DicomDir.dic
for( it = elemList.begin(); it != elemList.end(); ++it)
{
{
// NULL when we Build Up (ex nihilo) a DICOMDIR
// or when we add the META elems
- val = header->GetEntryString(tmpGr, tmpEl);
+
+ val = header->GetEntryString(tmpGr, tmpEl);
}
else
{
}
if ( val == GDCM_UNFOUND)
- {
- if ( tmpGr == 0x0004 && tmpEl == 0x1130 ) // File-set ID
- {
- // force to the *end* File Name
- val = Util::GetName( path );
- }
- else if ( tmpGr == 0x0004 && tmpEl == 0x1500 ) // Only used for image
- {
- if ( header->GetFileName().substr(0, path.length()) != path )
- {
- gdcmWarningMacro( "The base path of file name is incorrect");
- val = header->GetFileName();
- }
- else
- {
- val = &(header->GetFileName().c_str()[path.length()]);
- }
- }
- else
+ {
+ if ( tmpGr == 0x0004 ) // never present in File !
{
- val = it->Value;
+ switch (tmpEl)
+ {
+ case 0x1130: // File-set ID
+ // force to the *end* File Name
+ val = Util::GetName( path );
+ break;
+
+ case 0x1500: // Only used for image
+ if ( header->GetFileName().substr(0, path.length()) != path )
+ {
+ gdcmWarningMacro( "The base path of file name is incorrect");
+ val = header->GetFileName();
+ }
+ else
+ {
+ val = &(header->GetFileName().c_str()[path.length()+1]);
+ }
+ break;
+
+ case 0x1510: // Referenced SOP Class UID in File
+ referencedVal = header->GetEntryString(0x0008, 0x0016);
+ // FIXME : probabely something to check
+ val = referencedVal;
+ break;
+
+ case 0x1511: // Referenced SOP Instance UID in File
+ referencedVal = header->GetEntryString(0x0008, 0x0018);
+ // FIXME : probabely something to check
+ val = referencedVal;
+ break;
+
+ case 0x1512: // Referenced Transfer Syntax UID in File
+ referencedVal = header->GetEntryString(0x0002, 0x0010);
+ // FIXME : probabely something to check
+ val = referencedVal;
+ break;
+
+ default :
+ val = it->Value;
+ }
}
}
else
val = it->Value;
}
+/* FIX later the pb of creating the 'Implementation Version Name'!
+
+ if (val == GDCM_UNFOUND)
+ val = "";
+
+ if ( tmpGr == 0x0002 && tmpEl == 0x0013)
+ {
+ // 'Implementation Version Name'
+ std::string val = "GDCM ";
+ val += Util::GetVersion();
+ }
+*/
entry->SetString( val ); // troubles expected when vr=SQ ...
if ( type == GDCM_DICOMDIR_META ) // fusible : should never print !
{
- gdcmWarningMacro("GDCM_DICOMDIR_META ?!? should never print that");
+ gdcmDebugMacro("GDCM_DICOMDIR_META ?!? should never print that");
}
si->AddEntry(entry);
entry->Delete();
git://git.creatis.insa-lyon.fr / gdcm.git / blobdiff