Program: gdcm
Module: $RCSfile: gdcmDicomDir.cxx,v $
Language: C++
- Date: $Date: 2005/01/07 19:20:38 $
- Version: $Revision: 1.94 $
+ Date: $Date: 2005/01/17 10:59:52 $
+ Version: $Revision: 1.103 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
#include <sys/types.h>
#ifdef _MSC_VER
-#define getcwd _getcwd
+# define getcwd _getcwd
#endif
-#if defined( _MSC_VER) || defined(__BORLANDC__)
- #include <direct.h>
+#if defined(_MSC_VER) || defined(__BORLANDC__)
+# include <direct.h>
#else
- #include <unistd.h>
+# include <unistd.h>
#endif
namespace gdcm
DicomDir::DicomDir(std::string const &fileName, bool parseDir ):
Document( fileName )
{
- // Whatever user passed (a root directory or a DICOMDIR)
- // and whatever the value of parseDir was,
- // Document is already executed
+ // At this step, Document constructor is already executed,
+ // whatever user passed (a root directory or a DICOMDIR)
+ // and whatever the value of parseDir was.
+ // (nothing is cheked in Document constructor, to avoid overhead)
+
Initialize(); // sets all private fields to NULL
// if user passed a root directory, sure we didn't get anything
if ( TagHT.begin() == TagHT.end() ) // when user passed a Directory to parse
{
- gdcmVerboseMacro("DicomDir::DicomDir : entry HT empty");
+ if (!parseDir)
+ gdcmVerboseMacro( "Entry HT empty for file: "<<fileName);
+ // Only if user passed a root directory
+ // ------------------------------------
if ( fileName == "." )
{
// user passed '.' as Name
{
MetaElems = NewMeta();
- gdcmVerboseMacro("DicomDir::DicomDir : Parse directory"
- " and create the DicomDir");
+ gdcmVerboseMacro( "Parse directory and create the DicomDir");
ParseDirectory();
}
else
{
/// \todo if parseDir == false, it should be tagged as an error
- // NON ! il suffit d'appeler ParseDirectory()
- // apres le constructeur
+ // NO ! user may just call ParseDirectory() *after* constructor
}
}
- else // Only if user passed a DICOMDIR
+ // Only if user passed a DICOMDIR
+ // ------------------------------
+ else
{
// Directory record sequence
- DocEntry *e = GetDocEntryByNumber(0x0004, 0x1220);
+ DocEntry *e = GetDocEntry(0x0004, 0x1220);
if ( !e )
{
- gdcmVerboseMacro("DicomDir::DicomDir : NO Directory record"
- " sequence (0x0004,0x1220)");
+ gdcmVerboseMacro( "NO 'Directory record sequence' (0x0004,0x1220)"
+ << " in file " << fileName);
/// \todo FIXME : what do we do when the parsed file IS NOT a
/// DICOMDIR file ?
}
/**
* \brief Canonical Printer
*/
-void DicomDir::Print(std::ostream &os)
+void DicomDir::Print(std::ostream &os, std::string const & )
{
if( MetaElems )
{
*/
bool DicomDir::IsReadable()
{
- if( !Document::IsReadable() )
+ if( Filetype == Unknown)
{
+ gdcmVerboseMacro( "Wrong filetype");
return false;
}
if( !MetaElems )
{
+ gdcmVerboseMacro( "Meta Elements missing in DicomDir");
return false;
}
if( Patients.size() <= 0 )
{
+ gdcmVerboseMacro( "NO Patient in DicomDir");
return false;
}
void DicomDir::CreateDicomDirChainedList(std::string const & path)
{
CallStartMethod();
- DirList fileList(path,1); // gets recursively the file list
+ DirList dirList(path,1); // gets recursively the file list
unsigned int count = 0;
VectDocument list;
Header *header;
- for( DirList::iterator it = fileList.begin();
+ DirListType fileList = dirList.GetFilenames();
+
+ for( DirListType::iterator it = fileList.begin();
it != fileList.end();
++it )
{
header = new Header( it->c_str() );
if( !header )
{
- gdcmVerboseMacro( "DicomDir::CreateDicomDirChainedList: " <<
- "failure in new Header " <<
- it->c_str() );
+ gdcmVerboseMacro( "Failure in new Header " << it->c_str() );
continue;
}
{
// Add the file header to the chained list:
list.push_back(header);
- gdcmVerboseMacro( "DicomDir::CreateDicomDirChainedList: readable " <<
- it->c_str() );
+ gdcmVerboseMacro( "Readable " << it->c_str() );
}
else
{
// sorts Patient/Study/Serie/
std::sort(list.begin(), list.end(), DicomDir::HeaderLessThan );
- std::string tmp = fileList.GetDirName();
+ std::string tmp = dirList.GetDirName();
//for each Header of the chained list, add/update the Patient/Study/Serie/Image info
SetElements(tmp, list);
CallEndMethod();
{
tmpGr = it->Group;
tmpEl = it->Elem;
- dictEntry = GetPubDict()->GetDictEntryByNumber(tmpGr, tmpEl);
+ dictEntry = GetPubDict()->GetDictEntry(tmpGr, tmpEl);
entry = new ValEntry( dictEntry );
entry->SetOffset(0); // just to avoid further missprinting
entry->SetValue( it->Value );
si = new DicomDirImage();
if( !AddDicomDirImageToEnd(static_cast<DicomDirImage *>(si)) )
{
- gdcmVerboseMacro("DicomDir::SetElement:"
- "Add DicomDirImageToEnd failed");
+ gdcmVerboseMacro( "Add DicomDirImageToEnd failed");
}
break;
case GDCM_DICOMDIR_SERIE:
si = new DicomDirSerie();
if( !AddDicomDirSerieToEnd(static_cast<DicomDirSerie *>(si)) )
{
- gdcmVerboseMacro("DicomDir::SetElement:"
- "Add DicomDirSerieToEnd failed");
+ gdcmVerboseMacro( "Add DicomDirSerieToEnd failed");
}
break;
case GDCM_DICOMDIR_STUDY:
si = new DicomDirStudy();
if( !AddDicomDirStudyToEnd(static_cast<DicomDirStudy *>(si)) )
{
- gdcmVerboseMacro("DicomDir::SetElement:"
- "Add DicomDirStudyToEnd failed");
+ gdcmVerboseMacro( "Add DicomDirStudyToEnd failed");
}
break;
case GDCM_DICOMDIR_PATIENT:
si = new DicomDirPatient();
if( !AddDicomDirPatientToEnd(static_cast<DicomDirPatient *>(si)) )
{
- gdcmVerboseMacro("DicomDir::SetElement:"
- "Add DicomDirPatientToEnd failed");
+ gdcmVerboseMacro( "Add DicomDirPatientToEnd failed");
}
break;
case GDCM_DICOMDIR_META:
si = new DicomDirMeta();
if( MetaElems )
{
- gdcmVerboseMacro("DicomDir::SetElement:"
- "MetaElements already exist, they will be destroyed");
+ gdcmVerboseMacro( "MetaElements already exist, they will be destroyed");
delete MetaElems;
}
MetaElems = static_cast<DicomDirMeta *>(si);
{
tmpGr = it->Group;
tmpEl = it->Elem;
- dictEntry = GetPubDict()->GetDictEntryByNumber(tmpGr, tmpEl);
+ dictEntry = GetPubDict()->GetDictEntry(tmpGr, tmpEl);
entry = new ValEntry( dictEntry ); // Be sure it's never a BinEntry !
{
// NULL when we Build Up (ex nihilo) a DICOMDIR
// or when we add the META elems
- val = header->GetEntryByNumber(tmpGr, tmpEl);
+ val = header->GetEntry(tmpGr, tmpEl);
}
else
{
{
if( header->GetFileName().substr(0, path.length()) != path )
{
- gdcmVerboseMacro("DicomDir::SetElement : the base path"
- " of file name is incorrect");
+ gdcmVerboseMacro( "The base path of file name is incorrect");
val = header->GetFileName();
}
else
}
else
{
- if ( header->GetEntryLengthByNumber(tmpGr,tmpEl) == 0 )
+ if ( header->GetEntryLength(tmpGr,tmpEl) == 0 )
val = it->Value;
}
// + loop to 1 -
// Directory record sequence
- DocEntry *e = GetDocEntryByNumber(0x0004, 0x1220);
+ DocEntry *e = GetDocEntry(0x0004, 0x1220);
if ( !e )
{
- gdcmVerboseMacro("DicomDir::DicomDir : NO Directory record"
- " sequence (0x0004,0x1220)");
+ gdcmVerboseMacro( "NO Directory record sequence (0x0004,0x1220)");
/// \todo FIXME: what to do when the parsed file IS NOT a DICOMDIR file ?
return;
}
SeqEntry *s = dynamic_cast<SeqEntry *>(e);
if ( !s )
{
- gdcmVerboseMacro("DicomDir::CreateDicomDir: no SeqEntry present");
+ gdcmVerboseMacro( "No SeqEntry present");
// useless : (0x0004,0x1220) IS a Sequence !
return;
}
- DicomDirType type; // = DicomDir::GDCM_DICOMDIR_META;
MetaElems = NewMeta();
ListSQItem listItems = s->GetSQItems();
for( ListSQItem::iterator i = listItems.begin();
i !=listItems.end(); ++i )
{
- d = (*i)->GetDocEntryByNumber(0x0004, 0x1430); // Directory Record Type
+ d = (*i)->GetDocEntry(0x0004, 0x1430); // Directory Record Type
if ( ValEntry* valEntry = dynamic_cast<ValEntry *>(d) )
{
v = valEntry->GetValue();
}
else
{
- gdcmVerboseMacro("DicomDir::CreateDicomDir: not a ValEntry.");
+ gdcmVerboseMacro( "Not a ValEntry.");
continue;
}
{
si = new DicomDirPatient();
AddDicomDirPatientToEnd( static_cast<DicomDirPatient *>(si) );
- type = DicomDir::GDCM_DICOMDIR_PATIENT;
}
else if( v == "STUDY " )
{
si = new DicomDirStudy();
AddDicomDirStudyToEnd( static_cast<DicomDirStudy *>(si) );
- type = DicomDir::GDCM_DICOMDIR_STUDY;
}
else if( v == "SERIES" )
{
si = new DicomDirSerie();
AddDicomDirSerieToEnd( static_cast<DicomDirSerie *>(si) );
- type = DicomDir::GDCM_DICOMDIR_SERIE;
}
else if( v == "IMAGE " )
{
si = new DicomDirImage();
AddDicomDirImageToEnd( static_cast<DicomDirImage *>(si) );
- type = DicomDir::GDCM_DICOMDIR_IMAGE;
}
else
{
it != list.end(); ++it )
{
// get the current file characteristics
- patCurName = (*it)->GetEntryByNumber(0x0010,0x0010);
- patCurID = (*it)->GetEntryByNumber(0x0010,0x0011);
- studCurInstanceUID = (*it)->GetEntryByNumber(0x0020,0x000d);
- studCurID = (*it)->GetEntryByNumber(0x0020,0x0010);
- serCurInstanceUID = (*it)->GetEntryByNumber(0x0020,0x000e);
- serCurID = (*it)->GetEntryByNumber(0x0020,0x0011);
+ patCurName = (*it)->GetEntry(0x0010,0x0010);
+ patCurID = (*it)->GetEntry(0x0010,0x0011);
+ studCurInstanceUID = (*it)->GetEntry(0x0020,0x000d);
+ studCurID = (*it)->GetEntry(0x0020,0x0010);
+ serCurInstanceUID = (*it)->GetEntry(0x0020,0x000e);
+ serCurID = (*it)->GetEntry(0x0020,0x0011);
if( patCurName != patPrevName || patCurID != patPrevID || first )
{
{
return *header1 < *header2;
}
+
+/**
+ * \brief Initialise the visit of the DicomDirPatients of the DicomDir
+ */
+void DicomDir::InitTraversal()
+{
+ ItDicomDirPatient = Patients.begin();
+}
+
+/**
+ * \brief Get the next entry while visiting the DicomDirPatients
+ * \return The next DicomDirPatient if found, otherwhise NULL
+ */
+DicomDirPatient *DicomDir::GetNextEntry()
+{
+ if (ItDicomDirPatient != Patients.end())
+ {
+ DicomDirPatient *tmp = *ItDicomDirPatient;
+ ++ItDicomDirPatient;
+ return tmp;
+ }
+ else
+ {
+ return NULL;
+ }
+}
+
+
} // end namespace gdcm
//-----------------------------------------------------------------------------
git://git.creatis.insa-lyon.fr / gdcm.git / blobdiff