Program: gdcm
Module: $RCSfile: gdcmDicomDir.cxx,v $
Language: C++
- Date: $Date: 2005/01/24 14:14:10 $
- Version: $Revision: 1.115 $
+ Date: $Date: 2010/04/09 15:23:40 $
+ Version: $Revision: 1.198 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
=========================================================================*/
+//-----------------------------------------------------------------------------
+// For full DICOMDIR description, see:
+// PS 3.3-2003, pages 731-750
+//-----------------------------------------------------------------------------
#include "gdcmDicomDir.h"
+#include "gdcmDicomDirObject.h"
#include "gdcmDicomDirStudy.h"
#include "gdcmDicomDirSerie.h"
+#include "gdcmDicomDirVisit.h"
#include "gdcmDicomDirImage.h"
+#include "gdcmDicomDirPrivate.h"
#include "gdcmDicomDirPatient.h"
#include "gdcmDicomDirMeta.h"
#include "gdcmDicomDirElement.h"
#include "gdcmFile.h"
#include "gdcmSeqEntry.h"
#include "gdcmSQItem.h"
-#include "gdcmValEntry.h"
+#include "gdcmDataEntry.h"
+#include "gdcmCommandManager.h"
#include <fstream>
#include <string>
# include <unistd.h>
#endif
-namespace gdcm
-{
+#if defined(__BORLANDC__)
+ #include <mem.h> // for memset
+#endif
-//-----------------------------------------------------------------------------
-// For full DICOMDIR description, see:
-// PS 3.3-2003, pages 731-750
+// ----------------------------------------------------------------------------
+// Note for future developpers
+// ----------------------------------------------------------------------------
+//
+// Dicom PS 3.3 describes the relationship between Directory Records, as follow
+// (see also PS 4.3, 2004, page 50 for Entity-Relationship model)
+//
+// Directory Record Type Directory Record Types which may be included
+// in the next lower-level directory Entity
+//
+// (Root directory Entity) PATIENT, TOPIC, PRIVATE
+//
+// PATIENT STUDY, PRIVATE
+//
+// STUDY SERIES, VISIT, RESULTS, STUDY COMPONENT, PRIVATE
+//
+// SERIES IMAGE, OVERLAYS, MODALITY LUT, VOI LUT,
+// CURVE, STORED PRINT, RT DOSE, RT STRUCTURE SET
+// RT PLAN, RT TREAT RECORD, PRESENTATION, WAVEFORM,
+// SR DOCUMENT, KEY OBJECT DOC, SPECTROSCOPY,
+// RAW DATA, REGISTRATION, FIDUCIAL, PRIVATE,
+// ENCAP DOC
+// IMAGE
+// OVERLAY
+// MODALITY LUT
+// VOI LUT
+// CURVE
+// STORED PRINT
+// RT DOSE
+// RT STRUCTURE SET
+// RT PLAN
+// RT TREAT RECORD
+// PRESENTATION
+// WAVEFORM
+// SR DOCUMENT
+// KEY OBJECT DOC
+// SPECTROSCOPY
+// RAW DATA
+// REGISTRATION
+// FIDUCIAL
+// PRIVATE
+// ENCAP DOC
+//
+
+/*
+
+// see also : ftp://medical.nema.org/medical/dicom/final/cp343_ft.doc
+
+RELATIONSHIP BETWEEN DIRECTORY RECORDS
+
+Directory Record Type Directory Record Types which may be included
+ in the next lower-level directory Entity
+
+(Root Directory Entity) PATIENT, TOPIC, PRIVATE
+
+PATIENT STUDY, PRIVATE
+
+STUDY SERIES, VISIT, RESULTS, STUDY COMPONENT, PRIVATE
+
+SERIES IMAGE, OVERLAY, MODALITY LUT, VOI LUT, CURVE,
+ STORED PRINT, RT DOSE, RT STRUCTURE SET, RT PLAN,
+ RT TREAT RECORD, PRESENTATION, WAVEFORM, SR DOCUMENT,
+ KEY OBJECT DOC, SPECTROSCOPY, RAW DATA, PRIVATE
+
+IMAGE PRIVATE
+OVERLAY PRIVATE
+MODALITY LUT PRIVATE
+VOI LUT PRIVATE
+CURVE PRIVATE
+STORED PRINT PRIVATE
+RT DOSE PRIVATE
+RT STRUCTURE SET PRIVATE
+RT PLAN PRIVATE
+RT TREAT RECORD PRIVATE
+PRESENTATION PRIVATE
+WAVEFORM PRIVATE
+SR DOCUMENT PRIVATE
+KEY OBJECT DOC PRIVATE
+SPECTROSCOPY PRIVATE
+RAW DATA PRIVATE
+
+TOPIC STUDY, SERIES, IMAGE, OVERLAY, MODALITY LUT, VOI LUT,
+ CURVE, STORED PRINT, RT DOSE, RT STRUCTURE SET,
+ RT PLAN, RT TREAT RECORD, PRESENTATION, WAVEFORM,
+ SR DOCUMENT, KEY OBJECT DOC, SPECTROSCOPY, RAW DATA,
+ PRIVATE
+
+VISIT PRIVATE
+
+RESULTS INTERPRETATION, PRIVATE
+
+INTERPRETATION PRIVATE
+STUDY COMPONENT PRIVATE
+PRIVATE PRIVATE, (any of the above as privately defined)
+MRDR (Not applicable)
+
+Note : Directory Record Types PRINT QUEUE, FILM SESSION, FILM BOX, and
+ IMAGE BOX were previously defined in DICOM. They have been retired.
+ See PS 3.3-1998.
+*/
+
+// ----------------------
+// The current gdcm version only deals with :
+//
+// (Root directory Entity) PATIENT
+// PATIENT STUDY
+// STUDY SERIES
+// STUDY VISIT
+// SERIES IMAGE
+// IMAGE /
+//
+// DicomDir::CreateDicomDir will have to be completed
+// Treelike structure management will have to be upgraded
+// ----------------------------------------------------------------------------
+
+namespace GDCM_NAME_SPACE
+{
//-----------------------------------------------------------------------------
// Constructor / Destructor
-
/**
* \brief Constructor : creates an empty DicomDir
*/
DicomDir::DicomDir()
- :Document( )
{
Initialize(); // sets all private fields to NULL
+ ParseDir = false;
NewMeta();
}
+//#ifndef GDCM_LEGACY_REMOVE
/**
* \brief Constructor Parses recursively the directory and creates the DicomDir
* or uses an already built DICOMDIR, depending on 'parseDir' value.
- * @param fileName name
+ * @param fileName name
* - of the root directory (parseDir = true)
* - of the DICOMDIR (parseDir = false)
* @param parseDir boolean
* and wants to explore recursively the directories
* - false if user passed an already built DICOMDIR file
* and wants to use it
+ * @deprecated use : new DicomDir() + [ SetLoadMode(lm) + ] SetDirectoryName(name)
+ * or : new DicomDir() + SetFileName(name)
*/
+ /*
DicomDir::DicomDir(std::string const &fileName, bool parseDir ):
- Document( fileName )
+ Document( )
{
// At this step, Document constructor is already executed,
- // whatever user passed (a root directory or a DICOMDIR)
+ // whatever user passed (either a root directory or a DICOMDIR)
// and whatever the value of parseDir was.
- // (nothing is cheked in Document constructor, to avoid overhead)
-
- Initialize(); // sets all private fields to NULL
+ // (nothing is checked in Document constructor, to avoid overhead)
- // if user passed a root directory, sure we didn't get anything
+ ParseDir = parseDir;
+ SetLoadMode (LD_ALL); // concerns only dicom files
+ SetFileName( fileName );
+ Load( );
+}
+*/
+//#endif
- if ( GetFirstEntry() == 0 ) // when user passed a Directory to parse
+/**
+ * \brief Canonical destructor
+ */
+DicomDir::~DicomDir()
+{
+ ClearPatient();
+ if ( MetaElems )
{
- if (!parseDir)
- gdcmVerboseMacro( "Entry HT empty for file: "<<fileName);
-
- // Only if user passed a root directory
- // ------------------------------------
- if ( fileName == "." )
- {
- // user passed '.' as Name
- // we get current directory name
- char dummy[1000];
- getcwd(dummy, (size_t)1000);
- SetFileName( dummy ); // will be converted into a string
- }
+ MetaElems->Delete();
+ }
+}
- if ( parseDir ) // user asked for a recursive parsing of a root directory
- {
- NewMeta();
+//-----------------------------------------------------------------------------
+// Public
- gdcmVerboseMacro( "Parse directory and create the DicomDir");
- ParseDirectory();
- }
- else
- {
- /// \todo if parseDir == false, it should be tagged as an error
- // NO ! user may just call ParseDirectory() *after* constructor
- }
- }
- // Only if user passed a DICOMDIR
- // ------------------------------
- else
+/**
+ * \brief Loader. use SetFileName(fn)
+ * or SetLoadMode(lm) + SetDirectoryName(dn) before !
+ * @return false if file cannot be open or no swap info was found,
+ * or no tag was found.
+ */
+bool DicomDir::Load( )
+{
+ if (!ParseDir)
{
- // Directory record sequence
- DocEntry *e = GetDocEntry(0x0004, 0x1220);
- if ( !e )
- {
- gdcmVerboseMacro( "NO 'Directory record sequence' (0x0004,0x1220)"
- << " in file " << fileName);
- /// \todo FIXME : what do we do when the parsed file IS NOT a
- /// DICOMDIR file ?
- }
- else
- CreateDicomDir();
+ if ( ! this->Document::Load( ) )
+ return false;
}
+ return DoTheLoadingJob( );
}
-
+//#ifndef GDCM_LEGACY_REMOVE
/**
- * \brief Canonical destructor
+ * \brief Loader. (DEPRECATED : kept not to break the API)
+ * @param fileName file to be open for parsing
+ * @return false if file cannot be open or no swap info was found,
+ * or no tag was found.
+ * @deprecated use SetFileName(n) + Load() instead
*/
-DicomDir::~DicomDir()
+ /*
+bool DicomDir::Load(std::string const &fileName )
{
- SetStartMethod(NULL);
- SetProgressMethod(NULL);
- SetEndMethod(NULL);
+ // We should clean out anything that already exists.
+ Initialize(); // sets all private fields to NULL
- for(ListDicomDirPatient::iterator cc = Patients.begin();
- cc!= Patients.end();
- ++cc)
+ SetFileName( fileName );
+ if (!ParseDir)
{
- delete *cc;
- }
- if ( MetaElems )
- {
- delete MetaElems;
+ if ( ! this->Document::Load( ) )
+ return false;
}
+ return DoTheLoadingJob( );
}
+*/
+//#endif
-//-----------------------------------------------------------------------------
-// Print
/**
- * \brief Canonical Printer
- * @param os ostream we want to print in
- * @param indent Indentation string to be prepended during printing
+ * \brief Does the Loading Job (internal use only)
+ * @return false if file cannot be open or no swap info was found,
+ * or no tag was found.
*/
-void DicomDir::Print(std::ostream &os, std::string const & )
+bool DicomDir::DoTheLoadingJob( )
{
- if( MetaElems )
+ Progress = 0.0f;
+ Abort = false;
+
+ if (!ParseDir)
{
- MetaElems->SetPrintLevel(PrintLevel);
- MetaElems->Print(os);
- }
- for(ListDicomDirPatient::iterator cc = Patients.begin();
- cc != Patients.end();
- ++cc)
+ // Only if user passed a DICOMDIR
+ // ------------------------------
+ Fp = 0;
+ if (!Document::Load() )
+ {
+ return false;
+ }
+
+ if ( GetFirstEntry() == 0 ) // when user passed a Directory to parse
+ {
+ gdcmWarningMacro( "Entry HT empty for file: "<< GetFileName());
+ return false;
+ }
+ // Directory record sequence
+ DocEntry *e = GetDocEntry(0x0004, 0x1220);
+ if ( !e )
+ {
+ gdcmWarningMacro( "NO 'Directory record sequence' (0x0004,0x1220)"
+ << " in file " << GetFileName());
+ return false;
+ }
+ else
+ {
+ CreateDicomDir();
+ }
+ }
+ else
{
- (*cc)->SetPrintLevel(PrintLevel);
- (*cc)->Print(os);
+ // Only if user passed a root directory
+ // ------------------------------------
+ if ( GetFileName() == "." )
+ {
+ // user passed '.' as Name
+ // we get current directory name
+ char buf[2048];
+ const char *cwd = getcwd(buf, 2048);
+ if( cwd )
+ {
+ SetFileName( buf ); // will be converted into a string
+ }
+ else
+ {
+ gdcmErrorMacro( "Path was too long to fit on 2048 bytes" );
+ }
+ }
+ NewMeta();
+ gdcmDebugMacro( "Parse directory and create the DicomDir : "
+ << GetFileName() );
+ ParseDirectory();
}
+ return true;
}
-//-----------------------------------------------------------------------------
-// Public
/**
* \brief This predicate, based on hopefully reasonable heuristics,
* decides whether or not the current document was properly parsed
*/
bool DicomDir::IsReadable()
{
- if( Filetype == Unknown)
+ if ( Filetype == Unknown )
{
- gdcmVerboseMacro( "Wrong filetype");
+ gdcmErrorMacro( "Wrong filetype for " << GetFileName());
return false;
}
- if( !MetaElems )
+ if ( !MetaElems )
{
- gdcmVerboseMacro( "Meta Elements missing in DicomDir");
+ gdcmWarningMacro( "Meta Elements missing in DicomDir");
return false;
}
- if( Patients.size() <= 0 )
+ if ( Patients.size() <= 0 )
{
- gdcmVerboseMacro( "NO Patient in DicomDir");
+ gdcmWarningMacro( "NO Patient in DicomDir");
return false;
}
}
/**
- * \brief fills the whole structure, starting from a root Directory
- */
-void DicomDir::ParseDirectory()
-{
- CreateDicomDirChainedList( GetFileName() );
- CreateDicomDir();
-}
-
-/**
- * \brief Set the start method to call when the parsing of the
- * directory starts.
- * @param method Method to call
- * @param arg Argument to pass to the method
- * @param argDelete Argument
- * \warning In python : the arg parameter isn't considered
- */
-void DicomDir::SetStartMethod( DicomDir::Method *method, void *arg,
- DicomDir::Method *argDelete )
+ * \brief adds *the* Meta to a partially created DICOMDIR
+ */
+DicomDirMeta *DicomDir::NewMeta()
{
- if( StartArg && StartMethodArgDelete )
+ if ( MetaElems )
{
- StartMethodArgDelete( StartArg );
+ MetaElems->Delete();
}
+ DocEntry *entry = GetFirstEntry();
+ if ( entry )
+ {
+ MetaElems = DicomDirMeta::New(true); // true = empty
- StartMethod = method;
- StartArg = arg;
- StartMethodArgDelete = argDelete;
-}
+ entry = GetFirstEntry();
+ while( entry )
+ {
+ if ( dynamic_cast<SeqEntry *>(entry) )
+ break;
-/**
- * \brief Set the method to delete the argument
- * The argument is destroyed when the method is changed or when the
- * class is destroyed
- * @param method Method to call to delete the argument
- */
-void DicomDir::SetStartMethodArgDelete( DicomDir::Method *method )
-{
- StartMethodArgDelete = method;
-}
+ MetaElems->AddEntry(entry);
+ RemoveEntry(entry);
-/**
- * \brief Set the progress method to call when the parsing of the
- * directory progress
- * @param method Method to call
- * @param arg Argument to pass to the method
- * @param argDelete Argument
- * \warning In python : the arg parameter isn't considered
- */
-void DicomDir::SetProgressMethod( DicomDir::Method *method, void *arg,
- DicomDir::Method *argDelete )
-{
- if( ProgressArg && ProgressMethodArgDelete )
+ entry = GetFirstEntry();
+ }
+ }
+ else // after root directory parsing
{
- ProgressMethodArgDelete( ProgressArg );
+ MetaElems = DicomDirMeta::New(false); // false = not empty
}
-
- ProgressMethod = method;
- ProgressArg = arg;
- ProgressMethodArgDelete = argDelete;
+ MetaElems->SetSQItemNumber(0); // To avoid further missprinting
+ return MetaElems;
}
/**
- * \brief Set the method to delete the argument
- * The argument is destroyed when the method is changed or when the
- * class is destroyed
- * @param method Method to call to delete the argument
+ * \brief adds a new Patient (with the basic elements) to a partially created
+ * DICOMDIR
*/
-void DicomDir::SetProgressMethodArgDelete( DicomDir::Method *method )
+DicomDirPatient *DicomDir::NewPatient()
{
- ProgressMethodArgDelete = method;
+ DicomDirPatient *dd = DicomDirPatient::New();
+ AddPatientToEnd( dd );
+ return dd;
}
/**
- * \brief Set the end method to call when the parsing of the directory ends
- * @param method Method to call
- * @param arg Argument to pass to the method
- * @param argDelete Argument
- * \warning In python : the arg parameter isn't considered
+ * \brief Remove all Patients
*/
-void DicomDir::SetEndMethod( DicomDir::Method *method, void *arg,
- DicomDir::Method *argDelete )
+void DicomDir::ClearPatient()
{
- if( EndArg && EndMethodArgDelete )
+ for(ListDicomDirPatient::iterator cc = Patients.begin();
+ cc!= Patients.end();
+ ++cc)
{
- EndMethodArgDelete( EndArg );
+ (*cc)->Unregister();
}
-
- EndMethod = method;
- EndArg = arg;
- EndMethodArgDelete = argDelete;
-}
-
-/**
- * \brief Set the method to delete the argument
- * The argument is destroyed when the method is changed or when
- * the class is destroyed
- * @param method Method to call to delete the argument
- */
-void DicomDir::SetEndMethodArgDelete( DicomDir::Method *method )
-{
- EndMethodArgDelete = method;
+ Patients.clear();
}
/**
DicomDirPatient *DicomDir::GetNextPatient()
{
gdcmAssertMacro (ItPatient != Patients.end());
- {
- ++ItPatient;
- if ( ItPatient != Patients.end() )
- return *ItPatient;
- }
+
+ ++ItPatient;
+ if ( ItPatient != Patients.end() )
+ return *ItPatient;
return NULL;
}
+/**
+ * \brief fills the whole structure, starting from a root Directory
+ */
+void DicomDir::ParseDirectory()
+{
+ CreateDicomDirChainedList( GetFileName() );
+ CreateDicomDir();
+}
+
/**
* \brief writes on disc a DICOMDIR
* \ warning does NOT add the missing elements in the header :
* it's up to the user doing it !
- * \todo : to be re-written using the DICOMDIR tree-like structure
- * *not* the chained list
- * (does NOT exist if the DICOMDIR is user-forged !)
* @param fileName file to be written to
* @return false only when fail to open
*/
-bool DicomDir::WriteDicomDir(std::string const &fileName)
+bool DicomDir::Write(std::string const &fileName)
{
int i;
- uint16_t sq[4] = { 0x0004, 0x1220, 0xffff, 0xffff };
- uint16_t sqt[4]= { 0xfffe, 0xe0dd, 0xffff, 0xffff };
+ uint16_t sq[6] = { 0x0004, 0x1220, 0x5153, 0x0000, 0xffff, 0xffff };
+ uint16_t sqt[4]= { 0xfffe, 0xe0dd, 0x0000, 0x0000 };
std::ofstream *fp = new std::ofstream(fileName.c_str(),
std::ios::out | std::ios::binary);
- if( !fp )
+ if ( !fp )
{
- gdcmVerboseMacro("Failed to open(write) File: " << fileName.c_str());
+ gdcmWarningMacro("Failed to open(write) File: " << fileName.c_str());
return false;
}
char filePreamble[128];
memset(filePreamble, 0, 128);
- fp->write(filePreamble, 128); //FIXME
+ fp->write(filePreamble, 128);
binary_write( *fp, "DICM");
DicomDirMeta *ptrMeta = GetMeta();
- ptrMeta->WriteContent(fp, ExplicitVR);
+ ptrMeta->WriteContent(fp, ExplicitVR, true, false);
// force writing 0004|1220 [SQ ], that CANNOT exist within DicomDirMeta
- for(i=0;i<4;++i)
+ for(i=0;i<6;++i)
{
binary_write(*fp, sq[i]);
}
cc != Patients.end();
++cc )
{
- (*cc)->WriteContent( fp, ExplicitVR );
+ (*cc)->WriteContent( fp, ExplicitVR, false, true );
}
// force writing Sequence Delimitation Item
for(i=0;i<4;++i)
{
- binary_write(*fp, sqt[i]); // fffe e0dd ffff ffff
+ binary_write(*fp, sqt[i]); // fffe e0dd 0000 0000
}
fp->close();
return true;
}
-//-----------------------------------------------------------------------------
-// Protected
-
-/**
- * \brief create a Document-like chained list from a root Directory
- * @param path entry point of the tree-like structure
- */
-void DicomDir::CreateDicomDirChainedList(std::string const & path)
-{
- CallStartMethod();
- DirList dirList(path,1); // gets recursively the file list
- unsigned int count = 0;
- VectDocument list;
- File *header;
-
- DirListType fileList = dirList.GetFilenames();
-
- for( DirListType::iterator it = fileList.begin();
- it != fileList.end();
- ++it )
- {
- Progress = (float)(count+1)/(float)fileList.size();
- CallProgressMethod();
- if( Abort )
- {
- break;
- }
-
- header = new File( it->c_str() );
- if( !header )
- {
- gdcmVerboseMacro( "Failure in new gdcm::File " << it->c_str() );
- continue;
- }
-
- if( header->IsReadable() )
- {
- // Add the file to the chained list:
- list.push_back(header);
- gdcmVerboseMacro( "Readable " << it->c_str() );
- }
- else
- {
- delete header;
- }
- count++;
- }
- // sorts Patient/Study/Serie/
- std::sort(list.begin(), list.end(), DicomDir::HeaderLessThan );
-
- std::string tmp = dirList.GetDirName();
- //for each File of the chained list, add/update the Patient/Study/Serie/Image info
- SetElements(tmp, list);
- CallEndMethod();
-
- for(VectDocument::iterator itDoc=list.begin();
- itDoc!=list.end();
- ++itDoc)
- {
- delete dynamic_cast<File *>(*itDoc);
- }
-}
-
-/**
- * \brief adds *the* Meta to a partially created DICOMDIR
- */
-
-DicomDirMeta *DicomDir::NewMeta()
-{
- if( MetaElems )
- delete MetaElems;
-
- // friend class hunting : we miss GetLastEntry and GetPreviousEntry
- // to be able to remove any direct reference to TagHT
-
- DocEntry *e = GetFirstEntry();
- if (e)
- //if ( TagHT.begin() != TagHT.end() ) // after Document Parsing
- {
- MetaElems = new DicomDirMeta(true);
-
- TagDocEntryHT::iterator lastOneButSequence = TagHT.end();
- lastOneButSequence --;
- // ALL the 'out of Sequence' Tags belong to Meta Elems
- // (we skip 0004|1220 [Directory record sequence] )
- for ( TagDocEntryHT::iterator cc = TagHT.begin();
- cc != lastOneButSequence;
- ++cc)
- {
- MetaElems->AddEntry( cc->second );
- }
- }
- else // after root directory parsing
- {
- MetaElems = new DicomDirMeta(false);
- }
- MetaElems->SetSQItemNumber(0); // To avoid further missprinting
- return MetaElems;
-}
-
-/**
- * \brief adds a new Patient (with the basic elements) to a partially created DICOMDIR
- */
-DicomDirPatient *DicomDir::NewPatient()
-{
- DicomDirPatient *p = new DicomDirPatient();
- AddPatientToEnd( p );
- return p;
-}
-
-/**
- * \brief adds to the HTable
- * the Entries (Dicom Elements) corresponding to the given type
- * @param path full path file name (only used when type = GDCM_DICOMDIR_IMAGE
- * @param type DicomDirObject type to create (GDCM_DICOMDIR_PATIENT,
- * GDCM_DICOMDIR_STUDY, GDCM_DICOMDIR_SERIE ...)
- * @param header Header of the current file
- */
-void DicomDir::SetElement(std::string const &path, DicomDirType type,
- Document *header)
-{
- ListDicomDirElem elemList; //FIXME this is going to be a by copy operation
- ListDicomDirElem::const_iterator it;
- uint16_t tmpGr, tmpEl;
- DictEntry *dictEntry;
- ValEntry *entry;
- std::string val;
- SQItem *si;
-
- switch( type )
- {
- case GDCM_DICOMDIR_IMAGE:
- elemList = Global::GetDicomDirElements()->GetDicomDirImageElements();
- si = new DicomDirImage(true);
- if( !AddImageToEnd(static_cast<DicomDirImage *>(si)) )
- {
- delete si;
- gdcmErrorMacro( "Add ImageToEnd failed");
- }
- break;
- case GDCM_DICOMDIR_SERIE:
- elemList = Global::GetDicomDirElements()->GetDicomDirSerieElements();
- si = new DicomDirSerie(true);
- if( !AddSerieToEnd(static_cast<DicomDirSerie *>(si)) )
- {
- delete si;
- gdcmErrorMacro( "Add SerieToEnd failed");
- }
- break;
- case GDCM_DICOMDIR_STUDY:
- elemList = Global::GetDicomDirElements()->GetDicomDirStudyElements();
- si = new DicomDirStudy(true);
- if( !AddStudyToEnd(static_cast<DicomDirStudy *>(si)) )
- {
- delete si;
- gdcmErrorMacro( "Add StudyToEnd failed");
- }
- break;
- case GDCM_DICOMDIR_PATIENT:
- elemList = Global::GetDicomDirElements()->GetDicomDirPatientElements();
- si = new DicomDirPatient(true);
- if( !AddPatientToEnd(static_cast<DicomDirPatient *>(si)) )
- {
- delete si;
- gdcmErrorMacro( "Add PatientToEnd failed");
- }
- break;
- case GDCM_DICOMDIR_META:
- elemList = Global::GetDicomDirElements()->GetDicomDirMetaElements();
- si = new DicomDirMeta(true);
- if( MetaElems )
- {
- delete MetaElems;
- gdcmErrorMacro( "MetaElements already exist, they will be destroyed");
- }
- MetaElems = static_cast<DicomDirMeta *>(si);
- break;
- default:
- return;
- }
- // removed all the seems-to-be-useless stuff about Referenced Image Sequence
- // to avoid further troubles
- // imageElem 0008 1140 "" // Referenced Image Sequence
- // imageElem fffe e000 "" // 'no length' item : length to be set to 0xffffffff later
- // imageElem 0008 1150 "" // Referenced SOP Class UID : to be set/forged later
- // imageElem 0008 1155 "" // Referenced SOP Instance UID : to be set/forged later
- // imageElem fffe e00d "" // Item delimitation : length to be set to ZERO later
- // for all the relevant elements found in their own spot of the DicomDir.dic
- // FIXME : troubles found when it's a SeqEntry
-
- for( it = elemList.begin(); it != elemList.end(); ++it)
- {
- tmpGr = it->Group;
- tmpEl = it->Elem;
- dictEntry = GetPubDict()->GetEntry(tmpGr, tmpEl);
-
- entry = new ValEntry( dictEntry ); // Be sure it's never a BinEntry !
-
- entry->SetOffset(0); // just to avoid further missprinting
-
- if( header )
- {
- // NULL when we Build Up (ex nihilo) a DICOMDIR
- // or when we add the META elems
- val = header->GetEntry(tmpGr, tmpEl);
- }
- else
- {
- val = GDCM_UNFOUND;
- }
-
- if( val == GDCM_UNFOUND)
+/**
+ * \brief Anonymize a DICOMDIR
+ * @return true
+ */
+
+bool DicomDir::Anonymize()
+{
+ DataEntry *v;
+ // Something clever to be found to forge the Patient names
+ std::ostringstream s;
+ int i = 1;
+ for(ListDicomDirPatient::iterator cc = Patients.begin();
+ cc!= Patients.end();
+ ++cc)
+ {
+ s << i;
+ v = (*cc)->GetDataEntry(0x0010, 0x0010) ; // Patient's Name
+ if (v)
{
- if( tmpGr == 0x0004 && tmpEl == 0x1130 ) // File-set ID
- {
- // force to the *end* File Name
- val = Util::GetName( path );
- }
- else if( tmpGr == 0x0004 && tmpEl == 0x1500 ) // Only used for image
- {
- if( header->GetFileName().substr(0, path.length()) != path )
- {
- gdcmVerboseMacro( "The base path of file name is incorrect");
- val = header->GetFileName();
- }
- else
- {
- val = &(header->GetFileName().c_str()[path.length()]);
- }
- }
- else
- {
- val = it->Value;
- }
+ v->SetString(s.str());
}
- else
+
+ v = (*cc)->GetDataEntry(0x0010, 0x0020) ; // Patient ID
+ if (v)
{
- if ( header->GetEntryLength(tmpGr,tmpEl) == 0 )
- val = it->Value;
+ v->SetString(" ");
}
- entry->SetValue( val ); // troubles expected when vr=SQ ...
-
- if ( type == GDCM_DICOMDIR_META ) // fusible : should never print !
+ v = (*cc)->GetDataEntry(0x0010, 0x0030) ; // Patient's BirthDate
+ if (v)
{
- gdcmVerboseMacro("GDCM_DICOMDIR_META ?!? should never print that");
+ v->SetString(" ");
}
- si->AddEntry(entry);
+ s << "";
+ i++;
}
+ return true;
}
-//-----------------------------------------------------------------------------
/**
- * \brief CallStartMethod
+ * \brief Copies all the attributes from an other DocEntrySet
+ * @param set entry to copy from
+ * @remarks The contained DocEntries are not copied, only referenced
*/
-void DicomDir::CallStartMethod()
+void DicomDir::Copy(DocEntrySet *set)
{
- Progress = 0.0f;
- Abort = false;
- if( StartMethod )
+ // Remove all previous childs
+ ClearPatient();
+
+ Document::Copy(set);
+
+ DicomDir *dd = dynamic_cast<DicomDir *>(set);
+ if( dd )
{
- StartMethod( StartArg );
+ if(MetaElems)
+ MetaElems->Unregister();
+ MetaElems = dd->MetaElems;
+ if(MetaElems)
+ MetaElems->Register();
+
+ Patients = dd->Patients;
+ for(ItPatient = Patients.begin();ItPatient != Patients.end();++ItPatient)
+ (*ItPatient)->Register();
}
}
//-----------------------------------------------------------------------------
+// Protected
/**
- * \brief CallProgressMethod
+ * \brief create a Document-like chained list from a root Directory
+ * @param path entry point of the tree-like structure
*/
-void DicomDir::CallProgressMethod()
+void DicomDir::CreateDicomDirChainedList(std::string const &path)
{
- if( ProgressMethod )
+ CallStartMethod();
+ DirList dirList(path,1); // gets recursively the file list
+ unsigned int count = 0;
+ VectDocument list;
+ File *f;
+
+ DirListType fileList = dirList.GetFilenames();
+ unsigned int nbFile = fileList.size();
+ for( DirListType::iterator it = fileList.begin();
+ it != fileList.end();
+ ++it )
{
- ProgressMethod( ProgressArg );
+ Progress = (float)(count+1)/(float)nbFile;
+ CallProgressMethod();
+ if ( Abort )
+ {
+ break;
+ }
+
+ f = File::New( );
+ f->SetLoadMode(LoadMode); // we allow user not to load Sequences,
+ // or Shadow groups, or ......
+ f->SetFileName( it->c_str() );
+ f->Load( );
+
+ if ( f->IsReadable() )
+ {
+ // Add the file to the chained list:
+ list.push_back(f);
+ gdcmDebugMacro( "Readable " << it->c_str() );
+ }
+ else
+ {
+ f->Delete();
+ }
+ count++;
}
-}
+ // sorts Patient/Study/Serie/
+ std::sort(list.begin(), list.end(), DicomDir::HeaderLessThan );
+
+ std::string tmp = dirList.GetDirName();
+ //for each File of the chained list, add/update the Patient/Study/Serie/Image info
+ SetElements(tmp, list);
+ CallEndMethod();
-//-----------------------------------------------------------------------------
-/**
- * \brief CallEndMethod
- */
-void DicomDir::CallEndMethod()
-{
- Progress = 1.0f;
- if( EndMethod )
+ for(VectDocument::iterator itDoc=list.begin();
+ itDoc!=list.end();
+ ++itDoc)
{
- EndMethod( EndArg );
+ dynamic_cast<File *>(*itDoc)->Delete();
}
}
+
//-----------------------------------------------------------------------------
// Private
/**
*/
void DicomDir::Initialize()
{
- StartMethod = NULL;
- ProgressMethod = NULL;
- EndMethod = NULL;
- StartMethodArgDelete = NULL;
- ProgressMethodArgDelete = NULL;
- EndMethodArgDelete = NULL;
- StartArg = NULL;
- ProgressArg = NULL;
- EndArg = NULL;
-
Progress = 0.0;
Abort = false;
}
/**
- * \brief create a 'DicomDir' from a DICOMDIR Header
+ * \brief create a 'gdcm::DicomDir' from a DICOMDIR Header
*/
void DicomDir::CreateDicomDir()
{
- // The list is parsed.
+ // The SeqEntries of "Directory Record Sequence" are parsed.
// When a DicomDir tag ("PATIENT", "STUDY", "SERIE", "IMAGE") is found :
+ // N.B. : VISIT, PRIVATE not fully dealt with
// 1 - we save the beginning iterator
// 2 - we continue to parse
// 3 - we find an other tag
// + we create the object for the precedent tag
// + loop to 1 -
+ gdcmDebugMacro("Create DicomDir");
// Directory record sequence
DocEntry *e = GetDocEntry(0x0004, 0x1220);
if ( !e )
{
- gdcmVerboseMacro( "NO Directory record sequence (0x0004,0x1220)");
- /// \todo FIXME: what to do when the parsed file IS NOT a DICOMDIR file ?
+ gdcmWarningMacro( "No Directory Record Sequence (0004,1220) found");
return;
}
SeqEntry *s = dynamic_cast<SeqEntry *>(e);
if ( !s )
{
- gdcmVerboseMacro( "No SeqEntry present");
- // useless : (0x0004,0x1220) IS a Sequence !
+ gdcmWarningMacro( "Element (0004,1220) is not a Sequence ?!?");
return;
}
while(tmpSI)
{
d = tmpSI->GetDocEntry(0x0004, 0x1430); // Directory Record Type
- if ( ValEntry* valEntry = dynamic_cast<ValEntry *>(d) )
+ if ( DataEntry *dataEntry = dynamic_cast<DataEntry *>(d) )
{
- v = valEntry->GetValue();
+ v = dataEntry->GetString();
}
else
{
- gdcmVerboseMacro( "Not a ValEntry.");
+ gdcmWarningMacro( "(0004,1430) not a DataEntry ?!?");
continue;
}
- if( v == "PATIENT " )
+ // A decent DICOMDIR has much more images than series,
+ // more series than studies, and so on.
+ // This is the right order to perform the tests
+
+ if ( v == "IMAGE " )
{
- si = new DicomDirPatient(true);
- if( !AddPatientToEnd( static_cast<DicomDirPatient *>(si)) )
+ si = DicomDirImage::New(true); // true = empty
+ if ( !AddImageToEnd( static_cast<DicomDirImage *>(si)) )
{
- delete si;
+ si->Delete();
si = NULL;
- gdcmErrorMacro( "Add PatientToEnd failed");
+ gdcmErrorMacro( "Add AddImageToEnd failed");
}
}
- else if( v == "STUDY " )
+ else if ( v == "SERIES" )
{
- si = new DicomDirStudy(true);
- if( !AddStudyToEnd( static_cast<DicomDirStudy *>(si)) )
+ si = DicomDirSerie::New(true); // true = empty
+ if ( !AddSerieToEnd( static_cast<DicomDirSerie *>(si)) )
{
- delete si;
+ si->Delete();
si = NULL;
- gdcmErrorMacro( "Add AddStudyToEnd failed");
+ gdcmErrorMacro( "Add AddSerieToEnd failed");
}
}
- else if( v == "SERIES" )
+ else if ( v == "VISIT " )
{
- si = new DicomDirSerie(true);
- if( !AddSerieToEnd( static_cast<DicomDirSerie *>(si)) )
+ si = DicomDirVisit::New(true); // true = empty
+ if ( !AddVisitToEnd( static_cast<DicomDirVisit *>(si)) )
{
- delete si;
+ si->Delete();
si = NULL;
- gdcmErrorMacro( "Add AddSerieToEnd failed");
+ gdcmErrorMacro( "Add AddVisitToEnd failed");
}
}
- else if( v == "IMAGE " )
+ else if ( v == "STUDY " )
{
- si = new DicomDirImage(true);
- if( !AddImageToEnd( static_cast<DicomDirImage *>(si)) )
+ si = DicomDirStudy::New(true); // true = empty
+ if ( !AddStudyToEnd( static_cast<DicomDirStudy *>(si)) )
{
- delete si;
+ si->Delete();
si = NULL;
- gdcmErrorMacro( "Add AddImageToEnd failed");
+ gdcmErrorMacro( "Add AddStudyToEnd failed");
}
}
+ else if ( v == "PATIENT " )
+ {
+ si = DicomDirPatient::New(true); // true = empty
+ if ( !AddPatientToEnd( static_cast<DicomDirPatient *>(si)) )
+ {
+ si->Delete();
+ si = NULL;
+ gdcmErrorMacro( "Add PatientToEnd failed");
+ }
+ }
+ /// \todo : deal with PRIVATE (not so easy, since PRIVATE appears
+ /// at different levels ?!? )
+
+ else if ( v == "PRIVATE " ) // for SIEMENS 'CSA Non Image'
+ {
+
+ gdcmWarningMacro( " -------------------------------------------"
+ << "a PRIVATE SQItem was found : " << v);
+ si = DicomDirPrivate::New(true); // true = empty
+ if ( !AddPrivateToEnd( static_cast<DicomDirPrivate *>(si)) )
+ {
+ si->Delete();
+ si = NULL;
+ gdcmErrorMacro( "Add PrivateToEnd failed");
+ }
+ }
else
{
- // It was not a 'PATIENT', nor a 'STUDY', nor a 'SERIE',
- // neither an 'IMAGE' SQItem. Skip to next item.
- continue;
+ // It was neither a 'PATIENT', nor a 'STUDY', nor a 'SERIE',
+ // nor an 'IMAGE' SQItem. Skip to next item.
+ gdcmWarningMacro( " -------------------------------------------"
+ << "a non PATIENT/STUDY/SERIE/IMAGE /VISIT/PRIVATE SQItem was found : "
+ << v);
+
+ // FIXME : deal with other item types !
+ tmpSI=s->GetNextSQItem(); // To avoid infinite loop
+ continue;
}
+ if ( si )
+ si->Copy(tmpSI);
- if( si )
- MoveSQItem(si,tmpSI);
tmpSI=s->GetNextSQItem();
}
-// friend hunting : this one will be difficult to remove !
- TagHT.clear();
+ ClearEntry();
}
/**
*/
bool DicomDir::AddStudyToEnd(DicomDirStudy *dd)
{
- if( Patients.size() > 0 )
+ if ( Patients.size() > 0 )
{
ListDicomDirPatient::iterator itp = Patients.end();
itp--;
*/
bool DicomDir::AddSerieToEnd(DicomDirSerie *dd)
{
- if( Patients.size() > 0 )
+ if ( Patients.size() > 0 )
{
ListDicomDirPatient::iterator itp = Patients.end();
itp--;
DicomDirStudy *study = (*itp)->GetLastStudy();
- if( study )
+ if ( study )
{
study->AddSerie(dd);
return true;
}
-/* if( (*itp)->GetDicomDirStudies().size() > 0 )
+ }
+ return false;
+}
+
+/**
+ * \brief AddVisitToEnd
+ * @param dd SQ Item to enqueue to the DicomDirVisit chained List
+ */
+bool DicomDir::AddVisitToEnd(DicomDirVisit *dd)
+{
+ if ( Patients.size() > 0 )
+ {
+ ListDicomDirPatient::iterator itp = Patients.end();
+ itp--;
+
+ DicomDirStudy *study = (*itp)->GetLastStudy();
+ if ( study )
{
- ListDicomDirStudy::const_iterator itst =
- (*itp)->GetDicomDirStudies().end();
- itst--;
- (*itst)->AddSerie(dd);
+ study->AddVisit(dd);
return true;
- }*/
+ }
}
return false;
}
-
/**
* \brief AddImageToEnd
* @param dd SQ Item to enqueue to the DicomDirImage chained List
*/
bool DicomDir::AddImageToEnd(DicomDirImage *dd)
{
- if( Patients.size() > 0 )
+ if ( Patients.size() > 0 )
{
ListDicomDirPatient::iterator itp = Patients.end();
itp--;
DicomDirStudy *study = (*itp)->GetLastStudy();
- if( study )
+ if ( study )
{
DicomDirSerie *serie = study->GetLastSerie();
- if( serie )
+ if ( serie )
{
serie->AddImage(dd);
return true;
}
}
-/* if( (*itp)->GetDicomDirStudies().size() > 0 )
- {
- ListDicomDirStudy::const_iterator itst =
- (*itp)->GetDicomDirStudies().end();
- itst--;
+ }
+ return false;
+}
+
+/**
+ * \brief AddPrivateToEnd
+ * @param dd SQ Item to enqueue to the DicomDirPrivate chained List
+ * (checked for SIEMENS 'CSA non image')
+ */
+bool DicomDir::AddPrivateToEnd(DicomDirPrivate *dd)
+{
+ if ( Patients.size() > 0 )
+ {
+ ListDicomDirPatient::iterator itp = Patients.end();
+ itp--;
- if( (*itst)->GetDicomDirSeries().size() > 0 )
+ DicomDirStudy *study = (*itp)->GetLastStudy();
+ if ( study )
+ {
+ DicomDirSerie *serie = study->GetLastSerie();
+ if ( serie )
{
- ListDicomDirSerie::const_iterator its = (*itst)->GetDicomDirSeries().end();
- its--;
- (*its)->AddImage(dd);
+ serie->AddPrivate(dd);
return true;
}
- }*/
+ }
}
return false;
}
/**
- * \brief for each Header of the chained list, add/update the Patient/Study/Serie/Image info
+ * \brief for each Header of the chained list,
+ * add/update the Patient/Study/Serie/Image info
* @param path path of the root directory
* @param list chained list of Headers
*/
-void DicomDir::SetElements(std::string const & path, VectDocument const &list)
+void DicomDir::SetElements(std::string const &path, VectDocument const &list)
{
- TagHT.clear();
- Patients.clear();
+ ClearEntry();
+ ClearPatient();
std::string patPrevName = "", patPrevID = "";
std::string studPrevInstanceUID = "", studPrevID = "";
bool first = true;
for( VectDocument::const_iterator it = list.begin();
- it != list.end(); ++it )
+ it != list.end();
+ ++it )
{
// get the current file characteristics
- patCurName = (*it)->GetEntry(0x0010,0x0010);
- patCurID = (*it)->GetEntry(0x0010,0x0011);
- studCurInstanceUID = (*it)->GetEntry(0x0020,0x000d);
- studCurID = (*it)->GetEntry(0x0020,0x0010);
- serCurInstanceUID = (*it)->GetEntry(0x0020,0x000e);
- serCurID = (*it)->GetEntry(0x0020,0x0011);
-
- if( patCurName != patPrevName || patCurID != patPrevID || first )
+ patCurName = (*it)->GetEntryString(0x0010,0x0010);
+ if (patCurName == "") // to prevent further troubles when wild anonymization was performed
+ patCurName = "gdcm^Patient";
+ patCurID = (*it)->GetEntryString(0x0010,0x0011);
+ studCurInstanceUID = (*it)->GetEntryString(0x0020,0x000d);
+ studCurID = (*it)->GetEntryString(0x0020,0x0010);
+ serCurInstanceUID = (*it)->GetEntryString(0x0020,0x000e);
+ serCurID = (*it)->GetEntryString(0x0020,0x0011);
+
+ if ( patCurName != patPrevName || patCurID != patPrevID || first )
{
SetElement(path, GDCM_DICOMDIR_PATIENT, *it);
first = true;
}
- // if new Study Deal with 'STUDY' Elements
- if( studCurInstanceUID != studPrevInstanceUID || studCurID != studPrevID
+ // if new Study, deal with 'STUDY' Elements
+ if ( studCurInstanceUID != studPrevInstanceUID || studCurID != studPrevID
|| first )
{
SetElement(path, GDCM_DICOMDIR_STUDY, *it);
first = true;
}
- // if new Serie Deal with 'SERIE' Elements
- if( serCurInstanceUID != serPrevInstanceUID || serCurID != serPrevID
+ // if new Serie, deal with 'SERIE' Elements
+ if ( serCurInstanceUID != serPrevInstanceUID || serCurID != serPrevID
|| first )
{
SetElement(path, GDCM_DICOMDIR_SERIE, *it);
- first = true;
}
// Always Deal with 'IMAGE' Elements
}
}
+/**
+ * \brief adds to the HTable
+ * the Entries (Dicom Elements) corresponding to the given type
+ * @param path full path file name (only used when type = GDCM_DICOMDIR_IMAGE
+ * @param type DicomDirObject type to create (GDCM_DICOMDIR_PATIENT,
+ * GDCM_DICOMDIR_STUDY, GDCM_DICOMDIR_SERIE ...)
+ * @param header Header of the current file
+ */
+void DicomDir::SetElement(std::string const &path, DicomDirType type,
+ Document *header)
+{
+ ListDicomDirElem elemList;
+ ListDicomDirElem::const_iterator it;
+ uint16_t tmpGr, tmpEl;
+ //DictEntry *dictEntry;
+ DataEntry *entry;
+ std::string val;
+ SQItem *si;
+ switch( type )
+ {
+ case GDCM_DICOMDIR_IMAGE:
+ elemList = Global::GetDicomDirElements()->GetDicomDirImageElements();
+ si = DicomDirImage::New(true);
+ if ( !AddImageToEnd(static_cast<DicomDirImage *>(si)) )
+ {
+ si->Delete();
+ gdcmErrorMacro( "Add ImageToEnd failed");
+ }
+ break;
+ case GDCM_DICOMDIR_SERIE:
+ elemList = Global::GetDicomDirElements()->GetDicomDirSerieElements();
+ si = DicomDirSerie::New(true);
+ if ( !AddSerieToEnd(static_cast<DicomDirSerie *>(si)) )
+ {
+ si->Delete();
+ gdcmErrorMacro( "Add SerieToEnd failed");
+ }
+ break;
+ case GDCM_DICOMDIR_STUDY:
+ elemList = Global::GetDicomDirElements()->GetDicomDirStudyElements();
+ si = DicomDirStudy::New(true);
+ if ( !AddStudyToEnd(static_cast<DicomDirStudy *>(si)) )
+ {
+ si->Delete();
+ gdcmErrorMacro( "Add StudyToEnd failed");
+ }
+ break;
+ case GDCM_DICOMDIR_PATIENT:
+ elemList = Global::GetDicomDirElements()->GetDicomDirPatientElements();
+ si = DicomDirPatient::New(true);
+ if ( !AddPatientToEnd(static_cast<DicomDirPatient *>(si)) )
+ {
+ si->Delete();
+ gdcmErrorMacro( "Add PatientToEnd failed");
+ }
+ break;
+ case GDCM_DICOMDIR_META: // never used ?!? --> Done within DoTheLoadingJob
+ if ( MetaElems )
+ {
+ MetaElems->Delete();
+ gdcmErrorMacro( "MetaElements already exist, they will be destroyed");
+ }
+ elemList = Global::GetDicomDirElements()->GetDicomDirMetaElements();
+ MetaElems = DicomDirMeta::New(true);
+ si = MetaElems;
+ break;
+ default:
+ return;
+ }
+
+ // FIXME : troubles found when it's a SeqEntry
+
+ // removed all the seems-to-be-useless stuff about Referenced Image Sequence
+ // to avoid further troubles
+ // imageElem 0008 1140 "" // Referenced Image Sequence
+ // imageElem fffe e000 "" // 'no length' item : length to be set to 0xffffffff later
+ // imageElem 0008 1150 "" // Referenced SOP Class UID : to be set/forged later
+ // imageElem 0008 1155 "" // Referenced SOP Instance UID : to be set/forged later
+ // imageElem fffe e00d "" // Item delimitation : length to be set to ZERO later
+
+ std::string referencedVal;
+ // for all the relevant elements found in their own spot of the DicomDir.dic
+ for( it = elemList.begin(); it != elemList.end(); ++it)
+ {
+ tmpGr = it->Group;
+ tmpEl = it->Elem;
+
+ entry = DataEntry::New(tmpGr, tmpEl, it->VR); // dicomelements file was modified, to store VR
+ entry->SetOffset(0); // just to avoid further missprinting
+
+ if ( header )
+ {
+ // NULL when we Build Up (ex nihilo) a DICOMDIR
+ // or when we add the META elems
+ val = header->GetEntryString(tmpGr, tmpEl);
+ }
+ else
+ {
+ val = GDCM_UNFOUND;
+ }
+
+ if ( val == GDCM_UNFOUND)
+ {
+ if ( tmpGr == 0x0004 ) // never present in File !
+ {
+ switch (tmpEl)
+ {
+ case 0x1130: // File-set ID
+ // force to the *end* File Name
+ val = Util::GetName( path );
+ break;
+
+ case 0x1500: // Only used for image
+ if ( header->GetFileName().substr(0, path.length()) != path )
+ {
+ gdcmWarningMacro( "The base path of file name is incorrect");
+ val = header->GetFileName();
+ }
+ else
+ {
+ // avoid the first '/' in File name !
+ if ( header->GetFileName().c_str()[path.length()]
+ == GDCM_FILESEPARATOR )
+ val = &(header->GetFileName().c_str()[path.length()+1]);
+ else
+ val = &(header->GetFileName().c_str()[path.length()]);
+ }
+ break;
+
+ case 0x1510: // Referenced SOP Class UID in File
+ referencedVal = header->GetEntryString(0x0008, 0x0016);
+ // FIXME : probabely something to check
+ val = referencedVal;
+ break;
+
+ case 0x1511: // Referenced SOP Instance UID in File
+ referencedVal = header->GetEntryString(0x0008, 0x0018);
+ // FIXME : probabely something to check
+ val = referencedVal;
+ break;
+
+ case 0x1512: // Referenced Transfer Syntax UID in File
+ referencedVal = header->GetEntryString(0x0002, 0x0010);
+ // FIXME : probabely something to check
+ val = referencedVal;
+ break;
+
+ default :
+ val = it->Value;
+ }
+ }
+ else
+ {
+ // If the entry is not found in the Header, don't write its 'value' in the DICOMDIR !
+ entry->Delete();
+ continue;
+ }
+ }
+ else
+ {
+ if ( header->GetEntryLength(tmpGr,tmpEl) == 0 )
+ {
+ val = it->Value;
+ // Don't polute the DICOMDIR with empty fields
+ if (val == "")
+ {
+ entry->Delete();
+ continue;
+ }
+ }
+ }
+
+/* FIX later the pb of creating the 'Implementation Version Name'!
+
+ if (val == GDCM_UNFOUND)
+ val = "";
+
+ if ( tmpGr == 0x0002 && tmpEl == 0x0013)
+ {
+ // 'Implementation Version Name'
+ std::string val = "GDCM ";
+ val += Util::GetVersion();
+ }
+*/
+
+ entry->SetString( val ); // troubles expected when vr=SQ ...
+
+ if ( type == GDCM_DICOMDIR_META ) // fusible : should never print !
+ {
+ gdcmDebugMacro("GDCM_DICOMDIR_META ?!? should never print that");
+ }
+
+ si->AddEntry(entry);
+ entry->Delete();
+ }
+}
+
/**
* \brief Move the content of the source SQItem to the destination SQItem
* Only DocEntry's are moved
* @param dst destination SQItem
* @param src source SQItem
*/
-void DicomDir::MoveSQItem(SQItem *dst,SQItem *src)
-{
+void DicomDir::MoveSQItem(DocEntrySet *dst, DocEntrySet *src)
+{
DocEntry *entry;
-
+// todo : rewrite the whole stuff, without using RemoveEntry an AddEntry,
+// to save time
entry = src->GetFirstEntry();
while(entry)
{
- src->RemoveEntryNoDestroy(entry);
- dst->AddEntry(entry);
+ dst->AddEntry(entry); // use it, *before* removing it!
+ src->RemoveEntry(entry);
// we destroyed -> the current iterator is not longer valid
entry = src->GetFirstEntry();
}
return *header1 < *header2;
}
-} // end namespace gdcm
+//-----------------------------------------------------------------------------
+// Print
+/**
+ * \brief Canonical Printer
+ * @param os ostream we want to print in
+ * @param indent Indentation string to be prepended during printing
+ */
+void DicomDir::Print(std::ostream &os, std::string const & )
+{
+ if ( MetaElems )
+ {
+ MetaElems->SetPrintLevel(PrintLevel);
+ MetaElems->Print(os);
+ }
+ for(ListDicomDirPatient::iterator cc = Patients.begin();
+ cc != Patients.end();
+ ++cc)
+ {
+ (*cc)->SetPrintLevel(PrintLevel);
+ (*cc)->Print(os);
+ }
+}
//-----------------------------------------------------------------------------
+} // end namespace gdcm
git://git.creatis.insa-lyon.fr / gdcm.git / blobdiff