Fix mistypings

[gdcm.git] / src / gdcmDicomDir.cxx

diff --git a/src/gdcmDicomDir.cxx b/src/gdcmDicomDir.cxx
index dae78e85c9b8ce7bf142022c085583c518bea0b9..f1fd2561784fa24e016817f60594168d37a82ffc 100644 (file)
--- a/src/gdcmDicomDir.cxx
+++ b/src/gdcmDicomDir.cxx
@@ -3,8 +3,8 @@
   Program:   gdcm
   Module:    $RCSfile: gdcmDicomDir.cxx,v $
   Language:  C++
-  Date:      $Date: 2007/04/12 13:06:03 $
-  Version:   $Revision: 1.192 $
+  Date:      $Date: 2010/04/09 15:23:40 $
+  Version:   $Revision: 1.198 $
   
   Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
   l'Image). All rights reserved. See Doc/License.txt or
@@ -102,6 +102,64 @@
 // PRIVATE
 // ENCAP DOC
 // 
+
+/*
+
+// see also : ftp://medical.nema.org/medical/dicom/final/cp343_ft.doc
+
+RELATIONSHIP BETWEEN DIRECTORY RECORDS
+
+Directory Record Type      Directory Record Types which may be included 
+                           in the next lower-level directory Entity
+
+(Root Directory Entity)    PATIENT, TOPIC, PRIVATE
+
+PATIENT                    STUDY, PRIVATE
+
+STUDY                      SERIES, VISIT, RESULTS, STUDY COMPONENT, PRIVATE
+
+SERIES                     IMAGE, OVERLAY, MODALITY LUT, VOI LUT, CURVE, 
+                           STORED PRINT, RT DOSE, RT STRUCTURE SET, RT PLAN, 
+                           RT TREAT RECORD, PRESENTATION, WAVEFORM, SR DOCUMENT,
+                            KEY OBJECT DOC, SPECTROSCOPY, RAW DATA, PRIVATE
+
+IMAGE                      PRIVATE
+OVERLAY                    PRIVATE
+MODALITY LUT               PRIVATE
+VOI LUT                    PRIVATE
+CURVE                      PRIVATE
+STORED PRINT               PRIVATE
+RT DOSE                    PRIVATE
+RT STRUCTURE SET           PRIVATE
+RT PLAN                    PRIVATE
+RT TREAT RECORD            PRIVATE
+PRESENTATION               PRIVATE
+WAVEFORM                   PRIVATE
+SR DOCUMENT                PRIVATE
+KEY OBJECT DOC             PRIVATE
+SPECTROSCOPY               PRIVATE
+RAW DATA                   PRIVATE
+
+TOPIC                      STUDY, SERIES, IMAGE, OVERLAY, MODALITY LUT, VOI LUT,
+                           CURVE, STORED PRINT, RT DOSE, RT STRUCTURE SET, 
+                           RT PLAN, RT TREAT RECORD, PRESENTATION, WAVEFORM, 
+                           SR DOCUMENT, KEY OBJECT DOC, SPECTROSCOPY, RAW DATA, 
+                           PRIVATE
+
+VISIT                      PRIVATE
+
+RESULTS                    INTERPRETATION, PRIVATE
+
+INTERPRETATION             PRIVATE
+STUDY COMPONENT            PRIVATE
+PRIVATE                    PRIVATE, (any of the above as privately defined)
+MRDR                      (Not applicable)
+
+Note :   Directory Record Types PRINT QUEUE, FILM SESSION, FILM BOX, and 
+         IMAGE BOX  were previously defined in DICOM.  They have been retired.  
+         See PS 3.3-1998.
+*/
+
 // ----------------------
 // The current gdcm version only deals with :
 //
@@ -116,7 +174,7 @@
 // Treelike structure management will have to be upgraded
 // ----------------------------------------------------------------------------
     
-namespace gdcm 
+namespace GDCM_NAME_SPACE 
 {
 //-----------------------------------------------------------------------------
 // Constructor / Destructor
@@ -422,7 +480,7 @@ bool DicomDir::Write(std::string const &fileName)
 
    std::ofstream *fp = new std::ofstream(fileName.c_str(),  
                                          std::ios::out | std::ios::binary);
-   if ( !fp ) 
+   if ( !fp )
    {
       gdcmWarningMacro("Failed to open(write) File: " << fileName.c_str());
       return false;
@@ -434,7 +492,7 @@ bool DicomDir::Write(std::string const &fileName)
    binary_write( *fp, "DICM");
  
    DicomDirMeta *ptrMeta = GetMeta();
-   ptrMeta->WriteContent(fp, ExplicitVR);
+   ptrMeta->WriteContent(fp, ExplicitVR, true, false);
    
    // force writing 0004|1220 [SQ ], that CANNOT exist within DicomDirMeta
    for(i=0;i<6;++i)
@@ -446,7 +504,7 @@ bool DicomDir::Write(std::string const &fileName)
                                      cc != Patients.end();
                                    ++cc )
    {
-      (*cc)->WriteContent( fp, ExplicitVR );
+      (*cc)->WriteContent( fp, ExplicitVR, false, true );
    }
    
    // force writing Sequence Delimitation Item
@@ -609,6 +667,7 @@ void DicomDir::CreateDicomDir()
 {
    // The SeqEntries of "Directory Record Sequence" are parsed. 
    //  When a DicomDir tag ("PATIENT", "STUDY", "SERIE", "IMAGE") is found :
+   //                    N.B. :  VISIT, PRIVATE not fully dealt with
    //  1 - we save the beginning iterator
    //  2 - we continue to parse
    //  3 - we find an other tag
@@ -705,7 +764,7 @@ void DicomDir::CreateDicomDir()
             gdcmErrorMacro( "Add PatientToEnd failed");
          }
       }
-      /// \to do : deal with PRIVATE (not so easy, since PRIVATE appears 
+      /// \todo : deal with PRIVATE (not so easy, since PRIVATE appears 
       ///                           at different levels ?!? )
       
       else if ( v == "PRIVATE " ) // for SIEMENS 'CSA Non Image'      
@@ -726,7 +785,7 @@ void DicomDir::CreateDicomDir()
          // It was neither a 'PATIENT', nor a 'STUDY', nor a 'SERIE',
          // nor an 'IMAGE' SQItem. Skip to next item.
          gdcmWarningMacro( " -------------------------------------------"
-         << "a non PATIENT/STUDY/SERIE/IMAGE SQItem was found : "
+         << "a non PATIENT/STUDY/SERIE/IMAGE /VISIT/PRIVATE SQItem was found : "
          << v);
 
         // FIXME : deal with other item types !
@@ -885,6 +944,8 @@ void DicomDir::SetElements(std::string const &path, VectDocument const &list)
    {
       // get the current file characteristics
       patCurName         = (*it)->GetEntryString(0x0010,0x0010);
+      if (patCurName == "") // to prevent further troubles when wild anonymization was performed
+         patCurName = "gdcm^Patient";
       patCurID           = (*it)->GetEntryString(0x0010,0x0011);
       studCurInstanceUID = (*it)->GetEntryString(0x0020,0x000d);
       studCurID          = (*it)->GetEntryString(0x0020,0x0010);