Program: gdcm
Module: $RCSfile: gdcmFile.cxx,v $
Language: C++
- Date: $Date: 2005/02/05 01:37:08 $
- Version: $Revision: 1.212 $
+ Date: $Date: 2005/02/10 20:53:23 $
+ Version: $Revision: 1.223 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
// If not found (ACR_NEMA) we try Image Position (0020,0030)
// If not found (ACR-NEMA), we consider Slice Location (0020,1041)
// or Location (0020,0050)
-// as the Z coordinate,
+// as the Z coordinate,
// 0. for all the coordinates if nothing is found
//
// ---------------------------------------------------------------
#include "gdcmTS.h"
#include "gdcmValEntry.h"
#include "gdcmBinEntry.h"
+#include "gdcmSeqEntry.h"
#include "gdcmRLEFramesInfo.h"
#include "gdcmJPEGFragmentsInfo.h"
*/
float File::GetXSpacing()
{
- float xspacing, yspacing;
+ float xspacing = 1.0;
+ float yspacing = 1.0;
const std::string &strSpacing = GetEntryValue(0x0028,0x0030);
- if ( strSpacing == GDCM_UNFOUND )
+ if( strSpacing == GDCM_UNFOUND )
{
gdcmWarningMacro( "Unfound Pixel Spacing (0028,0030)" );
return 1.;
if( ( nbValues = sscanf( strSpacing.c_str(),
"%f\\%f", &yspacing, &xspacing)) != 2 )
{
+ // if no values, xspacing is set to 1.0
+ if( nbValues == 0 )
+ xspacing = 1.0;
// if single value is found, xspacing is defaulted to yspacing
- if ( nbValues == 1 )
- {
+ if( nbValues == 1 )
xspacing = yspacing;
- }
if ( xspacing == 0.0 )
xspacing = 1.0;
}
// if sscanf cannot read any float value, it won't affect yspacing
- sscanf( strSpacing.c_str(), "%f", &yspacing);
+ int nbValues = sscanf( strSpacing.c_str(), "%f", &yspacing);
+
+ // if no values, xspacing is set to 1.0
+ if( nbValues == 0 )
+ yspacing = 1.0;
if ( yspacing == 0.0 )
yspacing = 1.0;
/**
* \brief Retrieve the number of Bits Stored (actually used)
- * (as opposite to number of Bits Allocated)
+ * (as opposed to number of Bits Allocated)
* @return The encountered number of Bits Stored, 0 by default.
* 0 means the file is NOT USABLE. The caller has to check it !
*/
*/
size_t File::GetPixelOffset()
{
- DocEntry* pxlElement = GetDocEntry(GrPixel,NumPixel);
+ DocEntry *pxlElement = GetDocEntry(GrPixel, NumPixel);
if ( pxlElement )
{
return pxlElement->GetOffset();
*/
size_t File::GetPixelAreaLength()
{
- DocEntry* pxlElement = GetDocEntry(GrPixel,NumPixel);
+ DocEntry *pxlElement = GetDocEntry(GrPixel, NumPixel);
if ( pxlElement )
{
return pxlElement->GetLength();
}
/**
- * \brief anonymize a File (removes Patient's personal info)
- * (read the code to see which ones ...)
+ * \brief Adds the characteristics of a new element we want to anonymize
+ *
*/
-bool File::AnonymizeFile()
+void File::AddAnonymizeElement (uint16_t group, uint16_t elem,
+ std::string const &value)
+
+{
+ Element el;
+ el.Group = group;
+ el.Elem = elem;
+ el.Value = value;
+ AnonymizeList.push_back(el);
+}
+
+/**
+ * \brief Overwrites in the file the values of the DicomElements
+ * held in the list
+ */
+void File::AnonymizeNoLoad()
{
- // If exist, replace by spaces
- SetValEntry (" ",0x0010, 0x2154); // Telephone
- SetValEntry (" ",0x0010, 0x1040); // Adress
- SetValEntry (" ",0x0010, 0x0020); // Patient ID
+ std::fstream *fp = new std::fstream(Filename.c_str(),
+ std::ios::in | std::ios::out | std::ios::binary);
+
+ // TODO : FIXME
+ // how to white out disk space if longer than 50 ?
+
+
+ gdcm::DocEntry *d;
+ uint32_t offset;
+ uint32_t lgth;
+ uint32_t valLgth = 0;
+ std::string *spaces;
+ for (ListElements::iterator it = AnonymizeList.begin();
+ it != AnonymizeList.end();
+ ++it)
+ {
+ d = GetDocEntry( (*it).Group, (*it).Elem);
- DocEntry* patientNameHE = GetDocEntry (0x0010, 0x0010);
-
- if ( patientNameHE ) // we replace it by Study Instance UID (why not)
- {
- std::string studyInstanceUID = GetEntryValue (0x0020, 0x000d);
- if ( studyInstanceUID != GDCM_UNFOUND )
+ if ( d == NULL)
+ continue;
+
+ if ( dynamic_cast<BinEntry *>(d)
+ || dynamic_cast<SeqEntry *>(d) )
+ continue;
+
+ offset = d->GetOffset();
+ lgth = d->GetLength();
+ if (valLgth < lgth)
{
- InsertValEntry(studyInstanceUID, 0x0010, 0x0010);
+ spaces = new std::string( lgth-valLgth, ' ');
+ (*it).Value = (*it).Value + *spaces;
+ delete spaces;
}
- else
+ fp->seekp( offset, std::ios::beg );
+ fp->write( (*it).Value.c_str(), lgth );
+
+ }
+ fp->close();
+ delete fp;
+}
+
+/**
+ * \brief anonymize a File (removes Patient's personal info passed with
+ * AddAnonymizeElement()
+ */
+bool File::AnonymizeFile()
+{
+ // If Anonymisation list is empty, let's perform some basic anonymization
+ if ( AnonymizeList.begin() == AnonymizeList.end() )
+ {
+ // If exist, replace by spaces
+ SetValEntry (" ",0x0010, 0x2154); // Telephone
+ SetValEntry (" ",0x0010, 0x1040); // Adress
+ SetValEntry (" ",0x0010, 0x0020); // Patient ID
+
+ DocEntry* patientNameHE = GetDocEntry (0x0010, 0x0010);
+
+ if ( patientNameHE ) // we replace it by Study Instance UID (why not ?)
{
- InsertValEntry("anonymised", 0x0010, 0x0010);
+ std::string studyInstanceUID = GetEntryValue (0x0020, 0x000d);
+ if ( studyInstanceUID != GDCM_UNFOUND )
+ {
+ SetValEntry(studyInstanceUID, 0x0010, 0x0010);
+ }
+ else
+ {
+ SetValEntry("anonymised", 0x0010, 0x0010);
+ }
}
}
+ else
+ {
+ gdcm::DocEntry *d;
+ for (ListElements::iterator it = AnonymizeList.begin();
+ it != AnonymizeList.end();
+ ++it)
+ {
+ d = GetDocEntry( (*it).Group, (*it).Elem);
+
+ if ( d == NULL)
+ continue;
+
+ if ( dynamic_cast<BinEntry *>(d)
+ || dynamic_cast<SeqEntry *>(d) )
+ continue;
+
+ SetValEntry ((*it).Value, (*it).Group, (*it).Elem);
+ }
+}
- // Just for fun :-(
- // (if any) remove or replace all the stuff that contains a Date
+ // In order to make definitively impossible any further identification
+ // remove or replace all the stuff that contains a Date
//0008 0012 DA ID Instance Creation Date
//0008 0020 DA ID Study Date
}
}
-
-#ifdef GDCM_WORDS_BIGENDIAN
- // Super Super hack that will make gdcm a BOMB ! but should
- // Fix temporarily the dashboard
- BinEntry *b = GetBinEntry(GrPixel,NumPixel);
- if ( GetPixelSize() == 16 )
- {
- uint16_t *im16 = (uint16_t *)b->GetBinArea();
- int lgr = b->GetLength();
- for( int i = 0; i < lgr / 2; i++ )
- {
- im16[i]= (im16[i] >> 8) | (im16[i] << 8 );
- }
- }
-#endif //GDCM_WORDS_BIGENDIAN
-
-
Document::WriteContent(fp, filetype);
-
-#ifdef GDCM_WORDS_BIGENDIAN
- // Flip back the pixel ... I told you this is a hack
- if ( GetPixelSize() == 16 )
- {
- uint16_t *im16 = (uint16_t*)b->GetBinArea();
- int lgr = b->GetLength();
- for( int i = 0; i < lgr / 2; i++ )
- {
- im16[i]= (im16[i] >> 8) | (im16[i] << 8 );
- }
- }
-#endif //GDCM_WORDS_BIGENDIAN
-
-
fp->close();
delete fp;
// Media Storage SOP Class UID (CT Image Storage)
InsertValEntry("1.2.840.10008.5.1.4.1.1.2", 0x0002, 0x0002);
// Media Storage SOP Instance UID
- InsertValEntry(uidClass.c_str(), 0x0002, 0x0003);
+ InsertValEntry(uidMedia.c_str(), 0x0002, 0x0003);
// Transfer Syntax UID (Explicit VR Little Endian)
InsertValEntry("1.2.840.10008.1.2.1 ", 0x0002, 0x0010);
// META Implementation Class UID
long positionOnEntry = Fp->tellg();
long currentPosition = Fp->tellg(); // On debugging purposes
- //// Read the Item Tag group and element, and make
+ // Read the Item Tag group and element, and make
// sure they are what we expected:
uint16_t itemTagGroup;
uint16_t itemTagElement;
git://git.creatis.insa-lyon.fr / gdcm.git / blobdiff