Program: gdcm
Module: $RCSfile: gdcmHeader.cxx,v $
Language: C++
- Date: $Date: 2005/01/07 22:19:48 $
- Version: $Revision: 1.226 $
+ Date: $Date: 2005/01/08 15:03:59 $
+ Version: $Revision: 1.227 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
// Note: this IS the right place for the code
// Image Location
- const std::string &imgLocation = GetEntryByNumber(0x0028, 0x0200);
+ const std::string &imgLocation = GetEntry(0x0028, 0x0200);
if ( imgLocation == GDCM_UNFOUND )
{
// default value
// Let's create a VirtualDictEntry to allow a further VR modification
// and force VR to match with BitsAllocated.
- DocEntry *entry = GetDocEntryByNumber(GrPixel, NumPixel);
+ DocEntry *entry = GetDocEntry(GrPixel, NumPixel);
if ( entry != 0 )
{
}
// Bits Allocated
- if ( GetEntryByNumber(0x0028,0x0100) == "12")
+ if ( GetEntry(0x0028,0x0100) == "12")
{
- SetEntryByNumber("16", 0x0028,0x0100);
+ SetEntry("16", 0x0028,0x0100);
}
/// \todo correct 'Pixel group' Length if necessary
- int i_lgPix = GetEntryLengthByNumber(GrPixel, NumPixel);
+ int i_lgPix = GetEntryLength(GrPixel, NumPixel);
if (i_lgPix != -2)
{
// no (GrPixel, NumPixel) element
std::string s_lgPix = Util::Format("%d", i_lgPix+12);
s_lgPix = Util::DicomString( s_lgPix.c_str() );
- ReplaceOrCreateByNumber(s_lgPix,GrPixel, 0x0000);
+ ReplaceOrCreate(s_lgPix,GrPixel, 0x0000);
}
// FIXME : should be nice if we could move it to File
// Drop Palette Color, if necessary
- if ( GetEntryByNumber(0x0028,0x0002).c_str()[0] == '3' )
+ if ( GetEntry(0x0028,0x0002).c_str()[0] == '3' )
{
// if SamplesPerPixel = 3, sure we don't need any LUT !
// Drop 0028|1101, 0028|1102, 0028|1103
// Drop 0028|1201, 0028|1202, 0028|1203
- DocEntry *e = GetDocEntryByNumber(0x0028,0x01101);
+ DocEntry *e = GetDocEntry(0x0028,0x01101);
if (e)
{
RemoveEntryNoDestroy(e);
}
- e = GetDocEntryByNumber(0x0028,0x1102);
+ e = GetDocEntry(0x0028,0x1102);
if (e)
{
RemoveEntryNoDestroy(e);
}
- e = GetDocEntryByNumber(0x0028,0x1103);
+ e = GetDocEntry(0x0028,0x1103);
if (e)
{
RemoveEntryNoDestroy(e);
}
- e = GetDocEntryByNumber(0x0028,0x01201);
+ e = GetDocEntry(0x0028,0x01201);
if (e)
{
RemoveEntryNoDestroy(e);
}
- e = GetDocEntryByNumber(0x0028,0x1202);
+ e = GetDocEntry(0x0028,0x1202);
if (e)
{
RemoveEntryNoDestroy(e);
}
- e = GetDocEntryByNumber(0x0028,0x1203);
+ e = GetDocEntry(0x0028,0x1203);
if (e)
{
RemoveEntryNoDestroy(e);
return false;
}
- const std::string &res = GetEntryByNumber(0x0028, 0x0005);
+ const std::string &res = GetEntry(0x0028, 0x0005);
if ( res != GDCM_UNFOUND && atoi(res.c_str()) > 4 )
{
return false; // Image Dimensions
}
- if ( !GetDocEntryByNumber(0x0028, 0x0100) )
+ if ( !GetDocEntry(0x0028, 0x0100) )
{
return false; // "Bits Allocated"
}
- if ( !GetDocEntryByNumber(0x0028, 0x0101) )
+ if ( !GetDocEntry(0x0028, 0x0101) )
{
return false; // "Bits Stored"
}
- if ( !GetDocEntryByNumber(0x0028, 0x0102) )
+ if ( !GetDocEntry(0x0028, 0x0102) )
{
return false; // "High Bit"
}
- if ( !GetDocEntryByNumber(0x0028, 0x0103) )
+ if ( !GetDocEntry(0x0028, 0x0103) )
{
return false; // "Pixel Representation" i.e. 'Sign'
}
*/
int Header::GetXSize()
{
- const std::string &strSize = GetEntryByNumber(0x0028,0x0011);
+ const std::string &strSize = GetEntry(0x0028,0x0011);
if ( strSize == GDCM_UNFOUND )
{
return 0;
*/
int Header::GetYSize()
{
- const std::string &strSize = GetEntryByNumber(0x0028,0x0010);
+ const std::string &strSize = GetEntry(0x0028,0x0010);
if ( strSize != GDCM_UNFOUND )
{
return atoi( strSize.c_str() );
{
// Both DicomV3 and ACR/Nema consider the "Number of Frames"
// as the third dimension.
- const std::string &strSize = GetEntryByNumber(0x0028,0x0008);
+ const std::string &strSize = GetEntry(0x0028,0x0008);
if ( strSize != GDCM_UNFOUND )
{
return atoi( strSize.c_str() );
}
// We then consider the "Planes" entry as the third dimension
- const std::string &strSize2 = GetEntryByNumber(0x0028,0x0012);
+ const std::string &strSize2 = GetEntry(0x0028,0x0012);
if ( strSize2 != GDCM_UNFOUND )
{
return atoi( strSize2.c_str() );
float Header::GetXSpacing()
{
float xspacing, yspacing;
- const std::string &strSpacing = GetEntryByNumber(0x0028,0x0030);
+ const std::string &strSpacing = GetEntry(0x0028,0x0030);
if ( strSpacing == GDCM_UNFOUND )
{
float Header::GetYSpacing()
{
float yspacing = 1.;
- std::string strSpacing = GetEntryByNumber(0x0028,0x0030);
+ std::string strSpacing = GetEntry(0x0028,0x0030);
if ( strSpacing == GDCM_UNFOUND )
{
// Si le Spacing Between Slices est absent,
// on suppose que les coupes sont jointives
- const std::string &strSpacingBSlices = GetEntryByNumber(0x0018,0x0088);
+ const std::string &strSpacingBSlices = GetEntry(0x0018,0x0088);
if ( strSpacingBSlices == GDCM_UNFOUND )
{
gdcmVerboseMacro("Unfound StrSpacingBSlices");
- const std::string &strSliceThickness = GetEntryByNumber(0x0018,0x0050);
+ const std::string &strSliceThickness = GetEntry(0x0018,0x0050);
if ( strSliceThickness == GDCM_UNFOUND )
{
return 1.;
{
float resInter = 0.;
/// 0028 1052 DS IMG Rescale Intercept
- const std::string &strRescInter = GetEntryByNumber(0x0028,0x1052);
+ const std::string &strRescInter = GetEntry(0x0028,0x1052);
if ( strRescInter != GDCM_UNFOUND )
{
if( sscanf( strRescInter.c_str(), "%f", &resInter) != 1 )
{
float resSlope = 1.;
//0028 1053 DS IMG Rescale Slope
- std::string strRescSlope = GetEntryByNumber(0x0028,0x1053);
+ std::string strRescSlope = GetEntry(0x0028,0x1053);
if ( strRescSlope != GDCM_UNFOUND )
{
if( sscanf( strRescSlope.c_str(), "%f", &resSlope) != 1)
// 0028 0100 US IMG Bits Allocated
// (in order no to be messed up by old RGB images)
- if ( GetEntryByNumber(0x0028,0x0100) == "24" )
+ if ( GetEntry(0x0028,0x0100) == "24" )
{
return 3;
}
- std::string strPhotometricInterpretation = GetEntryByNumber(0x0028,0x0004);
+ std::string strPhotometricInterpretation = GetEntry(0x0028,0x0004);
if ( ( strPhotometricInterpretation == "PALETTE COLOR ") )
{
{
// 0028 0100 US IMG Bits Allocated
// (in order no to be messed up by old RGB images)
- if ( Header::GetEntryByNumber(0x0028,0x0100) == "24" )
+ if ( Header::GetEntry(0x0028,0x0100) == "24" )
{
return 3;
}
float Header::GetXOrigin()
{
float xImPos, yImPos, zImPos;
- std::string strImPos = GetEntryByNumber(0x0020,0x0032);
+ std::string strImPos = GetEntry(0x0020,0x0032);
if ( strImPos == GDCM_UNFOUND )
{
gdcmVerboseMacro( "Unfound Image Position Patient (0020,0032)");
- strImPos = GetEntryByNumber(0x0020,0x0030); // For ACR-NEMA images
+ strImPos = GetEntry(0x0020,0x0030); // For ACR-NEMA images
if ( strImPos == GDCM_UNFOUND )
{
gdcmVerboseMacro( "Unfound Image Position (RET) (0020,0030)");
float Header::GetYOrigin()
{
float xImPos, yImPos, zImPos;
- std::string strImPos = GetEntryByNumber(0x0020,0x0032);
+ std::string strImPos = GetEntry(0x0020,0x0032);
if ( strImPos == GDCM_UNFOUND)
{
gdcmVerboseMacro( "Unfound Image Position Patient (0020,0032)");
- strImPos = GetEntryByNumber(0x0020,0x0030); // For ACR-NEMA images
+ strImPos = GetEntry(0x0020,0x0030); // For ACR-NEMA images
if ( strImPos == GDCM_UNFOUND )
{
gdcmVerboseMacro( "Unfound Image Position (RET) (0020,0030)");
float Header::GetZOrigin()
{
float xImPos, yImPos, zImPos;
- std::string strImPos = GetEntryByNumber(0x0020,0x0032);
+ std::string strImPos = GetEntry(0x0020,0x0032);
if ( strImPos != GDCM_UNFOUND )
{
}
}
- strImPos = GetEntryByNumber(0x0020,0x0030); // For ACR-NEMA images
+ strImPos = GetEntry(0x0020,0x0030); // For ACR-NEMA images
if ( strImPos != GDCM_UNFOUND )
{
if( sscanf( strImPos.c_str(),
}
}
- std::string strSliceLocation = GetEntryByNumber(0x0020,0x1041); // for *very* old ACR-NEMA images
+ std::string strSliceLocation = GetEntry(0x0020,0x1041); // for *very* old ACR-NEMA images
if ( strSliceLocation != GDCM_UNFOUND )
{
if( sscanf( strSliceLocation.c_str(), "%f", &zImPos) != 1)
}
gdcmVerboseMacro( "Unfound Slice Location (0020,1041)");
- std::string strLocation = GetEntryByNumber(0x0020,0x0050);
+ std::string strLocation = GetEntry(0x0020,0x0050);
if ( strLocation != GDCM_UNFOUND )
{
if( sscanf( strLocation.c_str(), "%f", &zImPos) != 1)
// faster function. sscanf() can do all possible conversions whereas
// atoi() can only do single decimal integer conversions.
//0020 0013 IS REL Image Number
- std::string strImNumber = GetEntryByNumber(0x0020,0x0013);
+ std::string strImNumber = GetEntry(0x0020,0x0013);
if ( strImNumber != GDCM_UNFOUND )
{
return atoi( strImNumber.c_str() );
ModalityType Header::GetModality()
{
// 0008 0060 CS ID Modality
- std::string strModality = GetEntryByNumber(0x0008,0x0060);
+ std::string strModality = GetEntry(0x0008,0x0060);
if ( strModality != GDCM_UNFOUND )
{
if ( strModality.find("AU") < strModality.length()) return AU;
*/
int Header::GetBitsStored()
{
- std::string strSize = GetEntryByNumber( 0x0028, 0x0101 );
+ std::string strSize = GetEntry( 0x0028, 0x0101 );
if ( strSize == GDCM_UNFOUND )
{
gdcmVerboseMacro("This is supposed to be mandatory");
*/
int Header::GetHighBitPosition()
{
- std::string strSize = GetEntryByNumber( 0x0028, 0x0102 );
+ std::string strSize = GetEntry( 0x0028, 0x0102 );
if ( strSize == GDCM_UNFOUND )
{
gdcmVerboseMacro( "This is supposed to be mandatory");
*/
bool Header::IsSignedPixelData()
{
- std::string strSize = GetEntryByNumber( 0x0028, 0x0103 );
+ std::string strSize = GetEntry( 0x0028, 0x0103 );
if ( strSize == GDCM_UNFOUND )
{
gdcmVerboseMacro( "This is supposed to be mandatory");
*/
int Header::GetBitsAllocated()
{
- std::string strSize = GetEntryByNumber(0x0028,0x0100);
+ std::string strSize = GetEntry(0x0028,0x0100);
if ( strSize == GDCM_UNFOUND )
{
gdcmVerboseMacro( "This is supposed to be mandatory");
*/
int Header::GetSamplesPerPixel()
{
- const std::string& strSize = GetEntryByNumber(0x0028,0x0002);
+ const std::string& strSize = GetEntry(0x0028,0x0002);
if ( strSize == GDCM_UNFOUND )
{
gdcmVerboseMacro( "This is supposed to be mandatory");
*/
bool Header::IsMonochrome()
{
- const std::string& PhotometricInterp = GetEntryByNumber( 0x0028, 0x0004 );
+ const std::string& PhotometricInterp = GetEntry( 0x0028, 0x0004 );
if ( Util::DicomStringEqual(PhotometricInterp, "MONOCHROME1")
|| Util::DicomStringEqual(PhotometricInterp, "MONOCHROME2") )
{
*/
bool Header::IsPaletteColor()
{
- std::string PhotometricInterp = GetEntryByNumber( 0x0028, 0x0004 );
+ std::string PhotometricInterp = GetEntry( 0x0028, 0x0004 );
if ( PhotometricInterp == "PALETTE COLOR " )
{
return true;
*/
bool Header::IsYBRFull()
{
- std::string PhotometricInterp = GetEntryByNumber( 0x0028, 0x0004 );
+ std::string PhotometricInterp = GetEntry( 0x0028, 0x0004 );
if ( PhotometricInterp == "YBR_FULL" )
{
return true;
*/
int Header::GetPlanarConfiguration()
{
- std::string strSize = GetEntryByNumber(0x0028,0x0006);
+ std::string strSize = GetEntry(0x0028,0x0006);
if ( strSize == GDCM_UNFOUND )
{
gdcmVerboseMacro( "Absent Planar Configuration");
{
// 0028 0100 US IMG Bits Allocated
// (in order no to be messed up by old RGB images)
- // if (Header::GetEntryByNumber(0x0028,0x0100) == "24")
+ // if (Header::GetEntry(0x0028,0x0100) == "24")
// return 3;
std::string pixelType = GetPixelType();
*/
std::string Header::GetPixelType()
{
- std::string bitsAlloc = GetEntryByNumber(0x0028, 0x0100); // Bits Allocated
+ std::string bitsAlloc = GetEntry(0x0028, 0x0100); // Bits Allocated
if ( bitsAlloc == GDCM_UNFOUND )
{
gdcmVerboseMacro( "Unfound Bits Allocated");
bitsAlloc = "8"; // by old RGB images)
}
- std::string sign = GetEntryByNumber(0x0028, 0x0103);//"Pixel Representation"
+ std::string sign = GetEntry(0x0028, 0x0103);//"Pixel Representation"
if (sign == GDCM_UNFOUND )
{
*/
size_t Header::GetPixelOffset()
{
- DocEntry* pxlElement = GetDocEntryByNumber(GrPixel,NumPixel);
+ DocEntry* pxlElement = GetDocEntry(GrPixel,NumPixel);
if ( pxlElement )
{
return pxlElement->GetOffset();
*/
size_t Header::GetPixelAreaLength()
{
- DocEntry* pxlElement = GetDocEntryByNumber(GrPixel,NumPixel);
+ DocEntry* pxlElement = GetDocEntry(GrPixel,NumPixel);
if ( pxlElement )
{
return pxlElement->GetLength();
{
// Check the presence of the LUT Descriptors, and LUT Tables
// LutDescriptorRed
- if ( !GetDocEntryByNumber(0x0028,0x1101) )
+ if ( !GetDocEntry(0x0028,0x1101) )
{
return false;
}
// LutDescriptorGreen
- if ( !GetDocEntryByNumber(0x0028,0x1102) )
+ if ( !GetDocEntry(0x0028,0x1102) )
{
return false;
}
// LutDescriptorBlue
- if ( !GetDocEntryByNumber(0x0028,0x1103) )
+ if ( !GetDocEntry(0x0028,0x1103) )
{
return false;
}
// Red Palette Color Lookup Table Data
- if ( !GetDocEntryByNumber(0x0028,0x1201) )
+ if ( !GetDocEntry(0x0028,0x1201) )
{
return false;
}
// Green Palette Color Lookup Table Data
- if ( !GetDocEntryByNumber(0x0028,0x1202) )
+ if ( !GetDocEntry(0x0028,0x1202) )
{
return false;
}
// Blue Palette Color Lookup Table Data
- if ( !GetDocEntryByNumber(0x0028,0x1203) )
+ if ( !GetDocEntry(0x0028,0x1203) )
{
return false;
}
//Just hope Lookup Table Desc-Red = Lookup Table Desc-Red
// = Lookup Table Desc-Blue
// Consistency already checked in GetLUTLength
- std::string lutDescription = GetEntryByNumber(0x0028,0x1101);
+ std::string lutDescription = GetEntry(0x0028,0x1101);
if ( lutDescription == GDCM_UNFOUND )
{
return 0;
std::string Header::GetTransfertSyntaxName()
{
// use the TS (TS : Transfert Syntax)
- std::string transfertSyntax = GetEntryByNumber(0x0002,0x0010);
+ std::string transfertSyntax = GetEntry(0x0002,0x0010);
if ( transfertSyntax == GDCM_NOTLOADED )
{
bool Header::AnonymizeHeader()
{
// If exist, replace by spaces
- SetEntryByNumber (" ",0x0010, 0x2154); // Telephone
- SetEntryByNumber (" ",0x0010, 0x1040); // Adress
- SetEntryByNumber (" ",0x0010, 0x0020); // Patient ID
+ SetEntry (" ",0x0010, 0x2154); // Telephone
+ SetEntry (" ",0x0010, 0x1040); // Adress
+ SetEntry (" ",0x0010, 0x0020); // Patient ID
- DocEntry* patientNameHE = GetDocEntryByNumber (0x0010, 0x0010);
+ DocEntry* patientNameHE = GetDocEntry (0x0010, 0x0010);
if ( patientNameHE ) // we replace it by Study Instance UID (why not)
{
- std::string studyInstanceUID = GetEntryByNumber (0x0020, 0x000d);
+ std::string studyInstanceUID = GetEntry (0x0020, 0x000d);
if ( studyInstanceUID != GDCM_UNFOUND )
{
- ReplaceOrCreateByNumber(studyInstanceUID, 0x0010, 0x0010);
+ ReplaceOrCreate(studyInstanceUID, 0x0010, 0x0010);
}
else
{
- ReplaceOrCreateByNumber("anonymised", 0x0010, 0x0010);
+ ReplaceOrCreate("anonymised", 0x0010, 0x0010);
}
}
iop[0] = iop[1] = iop[2] = iop[3] = iop[4] = iop[5] = 0.;
// 0020 0037 DS REL Image Orientation (Patient)
- if ( (strImOriPat = GetEntryByNumber(0x0020,0x0037)) != GDCM_UNFOUND )
+ if ( (strImOriPat = GetEntry(0x0020,0x0037)) != GDCM_UNFOUND )
{
if( sscanf( strImOriPat.c_str(), "%f\\%f\\%f\\%f\\%f\\%f",
&iop[0], &iop[1], &iop[2], &iop[3], &iop[4], &iop[5]) != 6 )
}
//For ACR-NEMA
// 0020 0035 DS REL Image Orientation (RET)
- else if ( (strImOriPat = GetEntryByNumber(0x0020,0x0035)) != GDCM_UNFOUND )
+ else if ( (strImOriPat = GetEntry(0x0020,0x0035)) != GDCM_UNFOUND )
{
if( sscanf( strImOriPat.c_str(), "%f\\%f\\%f\\%f\\%f\\%f",
&iop[0], &iop[1], &iop[2], &iop[3], &iop[4], &iop[5]) != 6 )
// Special case this is the image (not a string)
GrPixel = 0x7fe0;
NumPixel = 0x0010;
- ReplaceOrCreateByNumber(0, 0, GrPixel, NumPixel);
+ ReplaceOrCreate(0, 0, GrPixel, NumPixel);
// All remaining strings:
unsigned int i = 0;
DICOM_DEFAULT_VALUE current = defaultvalue[i];
while( current.value )
{
- ReplaceOrCreateByNumber(current.value, current.group, current.elem);
+ ReplaceOrCreate(current.value, current.group, current.elem);
current = defaultvalue[++i];
}
}