Program: gdcm
Module: $RCSfile: gdcmHeader.cxx,v $
Language: C++
- Date: $Date: 2004/07/30 16:09:27 $
- Version: $Revision: 1.180 $
+ Date: $Date: 2004/09/20 18:14:23 $
+ Version: $Revision: 1.187 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
/**
* \brief Constructor
* @param filename name of the file whose header we want to analyze
- * @param exception_on_error whether we want to throw an exception or not
*/
-gdcmHeader::gdcmHeader( std::string const & filename,
- bool exception_on_error ):
- gdcmDocument( filename,
- exception_on_error )
+gdcmHeader::gdcmHeader( std::string const & filename ):
+ gdcmDocument( filename )
{
// for some ACR-NEMA images GrPixel, NumPixel is *not* 7fe0,0010
// We may encounter the 'RETired' (0x0028, 0x0200) tag
/**
* \brief Constructor
- * @param exception_on_error whether we want to throw an exception or not
*/
-gdcmHeader::gdcmHeader(bool exception_on_error) :
- gdcmDocument( exception_on_error )
+gdcmHeader::gdcmHeader()
+ :gdcmDocument()
{
}
* @param filetype Type of the File to be written
* (ACR-NEMA, ExplicitVR, ImplicitVR)
*/
-void gdcmHeader::Write(FILE* fp,FileType filetype) {
-
+void gdcmHeader::Write(FILE* fp,FileType filetype)
+{
// Bits Allocated
- if ( GetEntryByNumber(0x0028,0x0100) == "12") {
+ if ( GetEntryByNumber(0x0028,0x0100) == "12")
+ {
SetEntryByNumber("16", 0x0028,0x0100);
}
- // correct Pixel group Length if necessary
-
- // TODO : create a gdcmHeader::Write method and move this part.
- // (only gdcmHeader knows GrPixel, NumPixel)
+ // TODO : correct 'Pixel group' Length if necessary
int i_lgPix = GetEntryLengthByNumber(GrPixel, NumPixel);
- if (i_lgPix != -2) { // no (GrPixel, NumPixel) element
- char * dumm = new char[20];
+ if (i_lgPix != -2)
+ {
+ // no (GrPixel, NumPixel) element
+ char* dumm = new char[20];
sprintf(dumm ,"%d", i_lgPix+12);
std::string s_lgPix = dumm;
- delete dumm;
+ delete[] dumm;
ReplaceOrCreateByNumber(s_lgPix,GrPixel, 0x0000);
}
-
+
+ // FIXME : should be nice if we could move it to gdcmFile
+ // (or in future gdcmPixelData class)
+
// Drop Palette Color, if necessary
- if ( GetEntryByNumber(0x0028,0x0002).c_str()[0] == '3' ) {
- // if SamplesPerPixel = 3, sure we don't need any LUT !
- // Drop 0028|1101, 0028|1102, 0028|1103
- // Drop 0028|1201, 0028|1202, 0028|1203
-
- gdcmDocEntry *e;
- e=GetDocEntryByNumber(0x0028,0x01101);
- if (e)
- RemoveEntry(e);
- e=GetDocEntryByNumber(0x0028,0x1102);
- if (e)
- RemoveEntry(e);
- e=GetDocEntryByNumber(0x0028,0x1103);
-
- if (e)
- RemoveEntry(e);
- e=GetDocEntryByNumber(0x0028,0x01201);
- if (e)
- RemoveEntry(e);
- e=GetDocEntryByNumber(0x0028,0x1202);
- if (e)
- RemoveEntry(e);
- e=GetDocEntryByNumber(0x0028,0x1203);
- if (e)
- RemoveEntry(e);
- }
+ if ( GetEntryByNumber(0x0028,0x0002).c_str()[0] == '3' )
+ {
+ // if SamplesPerPixel = 3, sure we don't need any LUT !
+ // Drop 0028|1101, 0028|1102, 0028|1103
+ // Drop 0028|1201, 0028|1202, 0028|1203
+ gdcmDocEntry* e = GetDocEntryByNumber(0x0028,0x01101);
+ if (e)
+ {
+ RemoveEntryNoDestroy(e);
+ }
+ e = GetDocEntryByNumber(0x0028,0x1102);
+ if (e)
+ {
+ RemoveEntryNoDestroy(e);
+ }
+ e = GetDocEntryByNumber(0x0028,0x1103);
+ if (e)
+ {
+ RemoveEntryNoDestroy(e);
+ }
+ e = GetDocEntryByNumber(0x0028,0x01201);
+ if (e)
+ {
+ RemoveEntryNoDestroy(e);
+ }
+ e = GetDocEntryByNumber(0x0028,0x1202);
+ if (e)
+ {
+ RemoveEntryNoDestroy(e);
+ }
+ e = GetDocEntryByNumber(0x0028,0x1203);
+ if (e)
+ {
+ RemoveEntryNoDestroy(e);
+ }
+ }
gdcmDocument::Write(fp,filetype);
}
}
}
- return resInter;
+ return resInter;
}
/**
if( sscanf( strImPos.c_str(), "%f\\%f\\%f", &xImPos, &yImPos, &zImPos) != 3 )
{
- return 0.;
+ return 0.;
}
return xImPos;
return 0; // It's supposed to be mandatory
// the caller will have to check
}
-
return atoi( strSize.c_str() );
}
return 0; // It's supposed to be mandatory
// the caller will have to check
}
-
return atoi( strSize.c_str() );
}
return 1; // Well, it's supposed to be mandatory ...
// but sometimes it's missing : *we* assume Gray pixels
}
-
return atoi( strSize.c_str() );
}
{
return 0;
}
-
return atoi( strSize.c_str() );
}
{
return 8;
}
-
dbg.Verbose(0, "gdcmHeader::GetPixelSize: Unknown pixel type");
return 0;
}
{
sign = "S";
}
-
return bitsAlloc + sign;
}
*a = 1; // Alpha component
a += 4;
}
-
return LUTRGBA;
}
// use the gdcmTS (TS : Transfert Syntax)
std::string transfertSyntax = GetEntryByNumber(0x0002,0x0010);
+ if ( transfertSyntax == GDCM_NOTLOADED ) { // fusible
+ std::cout << "Transfert Syntax not loaded. " << std::endl
+ << "Better you increase MAX_SIZE_LOAD_ELEMENT_VALUE"
+ << std::endl;
+ return "Uncompressed ACR-NEMA";
+ }
if ( transfertSyntax == GDCM_UNFOUND )
{
dbg.Verbose(0, "gdcmHeader::GetTransfertSyntaxName:"
*/
void gdcmHeader::SetImageDataSize(size_t ImageDataSize)
{
- std::string content1;
char car[20];
-
sprintf(car,"%d",ImageDataSize);
gdcmDocEntry *a = GetDocEntryByNumber(GrPixel, NumPixel);
a->SetLength(ImageDataSize);
- ImageDataSize+=8;
+ ImageDataSize += 8;
sprintf(car,"%d",ImageDataSize);
- content1=car;
+
+ const std::string content1 = car;
SetEntryByNumber(content1, GrPixel, NumPixel);
}
*/
bool gdcmHeader::AnonymizeHeader()
{
- gdcmDocEntry* patientNameHE = GetDocEntryByNumber (0x0010, 0x0010);
+ // If exist, replace by spaces
+ SetEntryByNumber (" ",0x0010, 0x2154); // Telephone
+ SetEntryByNumber (" ",0x0010, 0x1040); // Adress
+ SetEntryByNumber (" ",0x0010, 0x0020); // Patient ID
- ReplaceIfExistByNumber (" ",0x0010, 0x2154); // Telephone
- ReplaceIfExistByNumber (" ",0x0010, 0x1040); // Adress
- ReplaceIfExistByNumber (" ",0x0010, 0x0020); // Patient ID
+ gdcmDocEntry* patientNameHE = GetDocEntryByNumber (0x0010, 0x0010);
- if ( patientNameHE )
+ if ( patientNameHE ) // we replace it by Study Instance UID (why not)
{
std::string studyInstanceUID = GetEntryByNumber (0x0020, 0x000d);
if ( studyInstanceUID != GDCM_UNFOUND )
* @param iop adress of the (6)float aray to receive values
* @return cosines of image orientation patient
*/
-void gdcmHeader::GetImageOrientationPatient( float* iop )
+void gdcmHeader::GetImageOrientationPatient( float iop[6] )
{
+ std::string strImOriPat;
//iop is supposed to be float[6]
- iop[0] = iop[1] = iop[2] = iop[3] = iop[4] = iop[5] = 0;
+ iop[0] = iop[1] = iop[2] = iop[3] = iop[4] = iop[5] = 0.;
// 0020 0037 DS REL Image Orientation (Patient)
- std::string strImOriPat = GetEntryByNumber(0x0020,0x0037);
- if ( strImOriPat != GDCM_UNFOUND )
+ if ( (strImOriPat = GetEntryByNumber(0x0020,0x0037)) != GDCM_UNFOUND )
{
if( sscanf( strImOriPat.c_str(), "%f\\%f\\%f\\%f\\%f\\%f",
&iop[0], &iop[1], &iop[2], &iop[3], &iop[4], &iop[5]) != 6 )
{
dbg.Verbose(0, "gdcmHeader::GetImageOrientationPatient: wrong Image Orientation Patient (0020,0037)");
- return ; // bug in the element 0x0020,0x0037
- }
- else
- {
- return ;
+ // bug in the element 0x0020,0x0037
}
}
-
//For ACR-NEMA
// 0020 0035 DS REL Image Orientation (RET)
- strImOriPat = GetEntryByNumber(0x0020,0x0035);
- if ( strImOriPat != GDCM_UNFOUND )
+ else if ( (strImOriPat = GetEntryByNumber(0x0020,0x0035)) != GDCM_UNFOUND )
{
if( sscanf( strImOriPat.c_str(), "%f\\%f\\%f\\%f\\%f\\%f",
&iop[0], &iop[1], &iop[2], &iop[3], &iop[4], &iop[5]) != 6 )
{
dbg.Verbose(0, "gdcmHeader::GetImageOrientationPatient: wrong Image Orientation Patient (0020,0035)");
- return ; // bug in the element 0x0020,0x0035
+ // bug in the element 0x0020,0x0035
}
}
- else
- {
- return;
- }
}
//-----------------------------------------------------------------------------
git://git.creatis.insa-lyon.fr / gdcm.git / blobdiff