-// gdcmHeader.h
+// $Header: /cvs/public/gdcm/src/Attic/gdcmHeader.h,v 1.28 2003/06/20 14:17:47 jpr Exp $
#ifndef GDCMHEADER_H
#define GDCMHEADER_H
#include <map>
#include "gdcmCommon.h"
+#include "gdcmUtil.h"
#include "gdcmException.h"
#include "gdcmDictSet.h"
#include "gdcmElValue.h"
#include "gdcmElValSet.h"
-////////////////////////////////////////////////////////////////////////////
-// The purpous of an instance of gdcmHeader is to act as a container of
-// all the elements and their corresponding values (and additionaly the
-// corresponding DICOM dictionary entry) of the header of a DICOM file.
-//
-// The typical usage of instances of class gdcmHeader is to classify a set of
-// dicom files according to header information e.g. to create a file hierarchy
-// reflecting the Patient/Study/Serie informations, or extracting a given
-// SerieId. Accesing the content (image[s] or volume[s]) is beyond the
-// functionality of this class and belong to gdmcFile (see below).
-// Notes:
-// * the various entries of the explicit value representation (VR) shall
-// be managed within a dictionary which is shared by all gdcmHeader instances
-// * the gdcmHeader::Set*Tag* family members cannot be defined as protected
-// (Swig limitations for as Has_a dependency between gdcmFile and gdcmHeader)
-
-typedef string VRKey;
-typedef string VRAtr;
-typedef map<VRKey, VRAtr> VRHT; // Value Representation Hash Table
+typedef std::string VRKey;
+typedef std::string VRAtr;
+typedef std::map<VRKey, VRAtr> VRHT; // Value Representation Hash Table
+
+/// The purpose of an instance of gdcmHeader is to act as a container of
+/// all the DICOM elements and their corresponding values (and
+/// additionaly the corresponding DICOM dictionary entry) of the header
+/// of a DICOM file.
+///
+/// The typical usage of instances of class gdcmHeader is to classify a set of
+/// dicom files according to header information e.g. to create a file hierarchy
+/// reflecting the Patient/Study/Serie informations, or extracting a given
+/// SerieId. Accesing the content (image[s] or volume[s]) is beyond the
+/// functionality of this class and belongs to gdmcFile.
+/// \note The various entries of the explicit value representation (VR) shall
+/// be managed within a dictionary which is shared by all gdcmHeader
+/// instances.
+/// \note The gdcmHeader::Set*Tag* family members cannot be defined as
+/// protected due to Swig limitations for as Has_a dependency between
+/// gdcmFile and gdcmHeader.
class GDCM_EXPORT gdcmHeader {
- void SkipBytes(guint32);
+ void SkipBytes(guint32);
private:
- static VRHT *dicom_vr;
- // Dictionaries of data elements:
-
- gdcmDictSet* Dicts; // global dictionary container
- gdcmDict* RefPubDict; // public dictionary
- gdcmDict* RefShaDict; // shadow dictionary (optional)
- // Parsed element values:
- ElValSet PubElVals; // parsed with Public Dictionary
- ElValSet ShaElVals; // parsed with Shadow Dictionary
- string filename; // refering underlying file
- FILE * fp;
- guint16 grPixel;
- guint16 numPixel;
- // Ne faudrait-il pas une indication sur la presence ou non
- // du 'groupe des pixels' dans l'entete?
- // (voir pb du DICOMDIR)
-
- // Swap code (little, big, bad-big, bad-little endian): this code is not fixed
- // during parsing.FIXME sw should be an enum e.g.
- //enum EndianType {
- //LittleEndian,
- //BadLittleEndian,
- //BigEndian,
- //BadBigEndian};
- int sw;
-
- // Only the elements whose size is below this bound will be loaded.
- // By default, this upper bound is limited to 1024 (which looks reasonable
- // when one considers the definition of the various VR contents).
- guint32 MaxSizeLoadElementValue;
-
- guint16 ReadInt16(void);
- guint32 ReadInt32(void);
- guint16 SwapShort(guint16);
- guint32 SwapLong(guint32);
- guint32 FindLengthOB(void);
- void Initialise(void);
- void CheckSwap(void);
- void InitVRDict(void);
- void SwitchSwapToBigEndian(void);
- void AddAndDefaultElements(void);
- void SetMaxSizeLoadElementValue(long);
-
- gdcmDictEntry * GetDictEntryByKey(guint16, guint16);
- gdcmDictEntry * GetDictEntryByName(string name);
-
- // ElValue related utilities
- ElValue * ReadNextElement(void);
- ElValue * NewElValueByKey(guint16 group, guint16 element);
- ElValue * NewElValueByName(string name);
- void FindLength(ElValue *);
- void FindVR(ElValue *);
- void LoadElementValue(ElValue *);
- void LoadElementValueSafe(ElValue *);
- void SkipElementValue(ElValue *);
- void FixFoundLength(ElValue*, guint32);
- bool IsAnInteger(ElValue *);
-
- bool IsImplicitVRLittleEndianTransferSyntax(void);
- bool IsExplicitVRLittleEndianTransferSyntax(void);
- bool IsDeflatedExplicitVRLittleEndianTransferSyntax(void);
- bool IsExplicitVRBigEndianTransferSyntax(void);
- bool IsJPEGBaseLineProcess1TransferSyntax(void);
- bool IsJPEGExtendedProcess2_4TransferSyntax(void);
- bool IsJPEGExtendedProcess3_5TransferSyntax(void);
- bool IsJPEGSpectralSelectionProcess6_8TransferSyntax(void);
-
+ /// Pointer to the Value Representation Hash Table which contains all
+ /// the VR of the DICOM version3 public dictionary.
+ gdcmVR *dicom_vr; // Not a class member for thread-safety reasons
+ /// Pointer to global dictionary container
+ gdcmDictSet* Dicts; // Not a class member for thread-safety reasons
+ /// Public dictionary used to parse this header
+ gdcmDict* RefPubDict;
+ /// Optional "shadow dictionary" (private elements) used to parse this
+ /// header
+ gdcmDict* RefShaDict;
+ /// Pointer to the Transfert Syntax Hash Table which contains all
+ /// the TS of the DICOM version3 public dictionary.
+ gdcmTS *dicom_ts; // Not a class member for thread-safety reasons
+
+ /// ELement VALueS parsed with the PUBlic dictionary.
+ gdcmElValSet PubElValSet;
+ /// ELement VALueS parsed with the SHAdow dictionary.
+ gdcmElValSet ShaElValSet;
+ /// Refering underlying filename.
+ std::string filename;
+
+ // FIXME sw should be an enum e.g.
+ //enum EndianType {
+ //LittleEndian,
+ //BadLittleEndian,
+ //BigEndian,
+ //BadBigEndian};
+ /// Swap code e.g. little, big, bad-big, bad-little endian). Warning:
+ /// this code is not fixed during header parsing.
+ int sw;
+
+ /// Size treshold above which an element value will NOT be loaded in
+ /// memory (to avoid loading the image/volume itself). By default,
+ /// this upper bound is fixed to 1024 bytes (which might look reasonable
+ /// when one considers the definition of the various VR contents).
+ guint32 MaxSizeLoadElementValue;
+
+ guint16 ReadInt16(void);
+ guint32 ReadInt32(void);
+ guint32 FindLengthOB(void);
+ void Initialise(void);
+ void CheckSwap(void);
+ void SwitchSwapToBigEndian(void);
+ // CLEAN ME: NewManualElValToPubDict is NOT called any more.
+ gdcmElValue* NewManualElValToPubDict(std::string NewTagName,
+ std::string VR);
+ void SetMaxSizeLoadElementValue(long);
+
+ gdcmDictEntry * GetDictEntryByNumber(guint16, guint16);
+ gdcmDictEntry * GetDictEntryByName(std::string Name);
+
+ // ElValue related utilities
+ gdcmElValue * ReadNextElement(void);
+ gdcmElValue * NewElValueByNumber(guint16 group, guint16 element);
+ gdcmElValue * NewElValueByName(std::string Name);
+
+ void FindLength(gdcmElValue *);
+ void FindVR(gdcmElValue *);
+ void LoadElementValue(gdcmElValue *);
+ void LoadElementValueSafe(gdcmElValue *);
+ void SkipElementValue(gdcmElValue *);
+ void FixFoundLength(gdcmElValue*, guint32);
+ bool IsAnInteger(gdcmElValue *);
+ void LoadElements(void);
+
protected:
- enum FileType {
- Unknown = 0,
- TrueDicom,
- ExplicitVR,
- ImplicitVR,
- ACR,
- ACR_LIBIDO}; // CLEANME
- FileType filetype;
- int write(ostream&);
- int anonymize(ostream&); // FIXME : anonymize should be a friend ?
+ FILE * fp;
+ FileType filetype;
+
+ gdcmElValue * GetElValueByNumber(guint16 group, guint16 element);
+
+ guint16 SwapShort(guint16); // needed by gdcmFile
+ guint32 SwapLong(guint32); // for JPEG Files :-(
+ bool OpenFile(bool exception_on_error = false)
+ throw(gdcmFileError);
+ bool CloseFile(void);
+ int write(std::ostream&);
+ int anonymize(std::ostream&); // FIXME : anonymize should be a friend ?
public:
- void LoadElements(void);
- virtual void ParseHeader(bool exception_on_error = false)
- throw(gdcmFormatError);
- gdcmHeader(const char *filename, bool exception_on_error = false)
- throw(gdcmFileError);
- virtual ~gdcmHeader();
-
- size_t GetPixelOffset(void);
- void GetPixels(size_t, void *);
- int GetSwapCode(void) { return sw; }
-
- // TODO Swig int SetPubDict(string filename);
- // When some proprietary shadow groups are disclosed, we can set up
- // an additional specific dictionary to access extra information.
- // TODO Swig int SetShaDict(string filename);
-
- // Get the element values themselves:
- string GetPubElValByName(string TagName);
- string GetPubElValByNumber(guint16 group, guint16 element);
-
- // Getting the element value representation (VR) might be needed by caller
- // to convert the string typed content to caller's native type
- // (think of C/C++ vs Python).
-
- string GetPubElValRepByName(string TagName);
- string GetPubElValRepByNumber(guint16 group, guint16 element);
-
- TagElValueHT & GetPubElVal(void) { return PubElVals.GetTagHt(); };
- void PrintPubElVal(ostream & os = cout);
- void PrintPubDict(ostream & os = cout);
-
- // Same thing with the shadow :
- // TODO Swig string* GetShaTagNames();
- string GetShaElValByName(string TagName);
- string GetShaElValByNumber(guint16 group, guint16 element);
- string GetShaElValRepByName(string TagName);
- string GetShaElValRepByNumber(guint16 group, guint16 element);
-
- // Wrappers of the above (public is privileged over shadow) to avoid
- // bugging the caller with knowing if ElVal is from the public or shadow
- // dictionary.
- string GetElValByName(string TagName);
- string GetElValByNumber(guint16 group, guint16 element);
- string GetElValRepByName(string TagName);
- string GetElValRepByNumber(guint16 group, guint16 element);
-
- int SetPubElValByName(string content, string TagName);
- int SetPubElValByNumber(string content, guint16 group, guint16 element);
- int SetShaElValByName(string content, string ShadowTagName);
- int SetShaElValByNumber(string content, guint16 group, guint16 element);
-
- ElValSet GetPubElVals() { return(PubElVals); }
+ bool IsReadable(void);
+ bool IsImplicitVRLittleEndianTransferSyntax(void);
+ bool IsExplicitVRLittleEndianTransferSyntax(void);
+ bool IsDeflatedExplicitVRLittleEndianTransferSyntax(void);
+ bool IsExplicitVRBigEndianTransferSyntax(void);
+ bool IsJPEGBaseLineProcess1TransferSyntax(void);
+ bool IsJPEGExtendedProcess2_4TransferSyntax(void);
+ bool IsJPEGExtendedProcess3_5TransferSyntax(void);
+ bool IsJPEGSpectralSelectionProcess6_8TransferSyntax(void);
+ bool IsJPEGLossless(void);
+ bool IsDicomV3(void);
+
+ virtual void ParseHeader(bool exception_on_error = false)
+ throw(gdcmFormatError);
+ gdcmHeader(const char *filename, bool exception_on_error = false);
+ gdcmHeader( bool exception_on_error = false);
+ virtual ~gdcmHeader();
+
+ size_t GetPixelOffset(void);
+ int GetSwapCode(void) { return sw; }
+
+ // TODO Swig int SetPubDict(std::string filename);
+ // When some proprietary shadow groups are disclosed, we can set up
+ // an additional specific dictionary to access extra information.
+ // TODO Swig int SetShaDict(std::string filename);
+
+ std::string GetPubElValByName (std::string TagName);
+ std::string GetPubElValRepByName (std::string TagName);
+ std::string GetPubElValByNumber (guint16 group, guint16 element);
+ std::string GetPubElValRepByNumber(guint16 group, guint16 element);
+
+ TagElValueHT & GetPubElVal(void) { return PubElValSet.GetTagHt(); };
+ void PrintPubElVal(std::ostream & os = std::cout);
+ void PrintPubDict (std::ostream & os = std::cout);
+
+ // TODO Swig std::string* GetShaTagNames();
+ std::string GetShaElValByName (std::string TagName);
+ std::string GetShaElValRepByName (std::string TagName);
+ std::string GetShaElValByNumber (guint16 group, guint16 element);
+ std::string GetShaElValRepByNumber(guint16 group, guint16 element);
+
+ std::string GetElValByName (std::string TagName);
+ std::string GetElValRepByName (std::string TagName);
+ std::string GetElValByNumber (guint16 group, guint16 element);
+ std::string GetElValRepByNumber(guint16 group, guint16 element);
+
+ int SetPubElValByName (std::string content, std::string TagName);
+ int SetShaElValByName (std::string content, std::string ShadowTagName);
+ int SetPubElValByNumber(std::string content, guint16 group, guint16 element);
+
+ int SetShaElValByNumber(std::string content, guint16 group, guint16 element);
+
+ int SetPubElValLengthByNumber(guint32 lgr, guint16 group, guint16 element);
+
+ int ReplaceOrCreateByNumber(std::string Value, guint16 Group, guint16 Elem);
+ int ReplaceOrCreateByNumber(char * Value, guint16 Group, guint16 Elem);
+
+ int GetXSize(void);
+ int GetYSize(void);
+ int GetZSize(void);
+ int GetBitsStored(void);
+ int GetSamplesPerPixel(void);
+ int GetPixelSize(void);
+ std::string GetPixelType(void);
+
+ float GetXSpacing(void);
+ float GetYSpacing(void);
+ float GetZSpacing(void);
+
+ float GetXImagePosition(void);
+ float GetYImagePosition(void);
+ float GetZImagePosition(void);
+
+ int Write(FILE *, FileType);
};
#endif
git://git.creatis.insa-lyon.fr / gdcm.git / blobdiff