+++ /dev/null
-#include <creaImageIOTreeDescriptor.h>
-#include <boost/algorithm/string/split.hpp>
-#include <boost/algorithm/string/replace.hpp>
-#include <creaImageIOSystem.h>
-#include <boost/filesystem.hpp>
-
-
-#include <fstream>
-
-
-namespace creaImageIO
-{
-
- namespace tree
- {
-
- //==================================================================
- /// The attribute is hidden (not visible to user)
- const unsigned int AttributeDescriptor::PRIVATE = 1;
- /// The attribute enters in unique identifier constitution
- const unsigned int AttributeDescriptor::IDENTIFIER = 2;
- /// The attribute can be edited
- const unsigned int AttributeDescriptor::EDITABLE = 3;
- /// the attribute describes the node
- const unsigned int AttributeDescriptor::LABEL = 4;
- //==================================================================
-
- //==================================================================
- Descriptor::Descriptor()
- {
- CreateLevel0Descriptor();
- }
- //==================================================================
-
- //==================================================================
- Descriptor::~Descriptor()
- {
- }
- //==================================================================
-
- //==================================================================
- void Descriptor::CreateLevel0Descriptor()
- {
- Add(LevelDescriptor("Root"));
- }
- //==================================================================
-
- //==================================================================
- /// Creates the default descriptor
- void Descriptor::CreateDefault()
- {
- // clears the existing one
- Clear();
-
- // Creates the level 0 descriptor
- CreateLevel0Descriptor();
- // Creates the attribute "Name"
- Add(AttributeDescriptor("Name","Name",
- AttributeDescriptor::LABEL),0);
-
- // Patient level
- Add(LevelDescriptor("Patient"));
- Add(AttributeDescriptor("NumberOfChildren","#Series",0),1); // Number of Series
- Add(AttributeDescriptor(0x0010,0x0010, // Patient name
- AttributeDescriptor::LABEL),1);
- Add(AttributeDescriptor(0x0010,0x0040),1); // Patient sex
- Add(AttributeDescriptor(0x0010,0x0030),1); // Patient birthday
- Add(AttributeDescriptor(0x0010,0x0020, // Patient ID
- AttributeDescriptor::IDENTIFIER),1);
-
- // Study-series level
- Add(LevelDescriptor("Series"));
- Add(AttributeDescriptor("NumberOfChildren","#Images",0),2); // Number of images
- Add(AttributeDescriptor(0x0008,0x0060, // Modality
- AttributeDescriptor::LABEL),2);
- Add(AttributeDescriptor(0x0008,0x1030),2); // Study Description
- Add(AttributeDescriptor(0x0008,0x103E),2); // Description
- Add(AttributeDescriptor(0x0008,0x0080),2); // Institution Name
- Add(AttributeDescriptor(0x0008,0x0081),2); // Institution Adress
- Add(AttributeDescriptor(0x0008,0x1010),2); // Station Name
- Add(AttributeDescriptor(0x0008,0x1048),2); // Physician of Record
- Add(AttributeDescriptor(0x0008,0x1050),2); // Performing Physician's Name
- Add(AttributeDescriptor(0x0018,0x1030),2); // Protocol Name
-
- Add(AttributeDescriptor(0x0020,0x0010),2); // Study ID
- Add(AttributeDescriptor(0x0008,0x0020),2); // Study Date
- Add(AttributeDescriptor(0x0008,0x0030),2); // Study Time
- Add(AttributeDescriptor(0x0008,0x0050),2); // Study Accession Number
- Add(AttributeDescriptor(0x0008,0x0005),2); // Specific character set
- Add(AttributeDescriptor(0x0008,0x0021),2); // Series Date
- Add(AttributeDescriptor(0x0008,0x0031),2); // Series time
-
- Add(AttributeDescriptor(0x0020,0x000D // Study Instance UID
- ),2);//AttributeDescriptor::IDENTIFIER),2);
- Add(AttributeDescriptor(0x0020,0x000E, // Series Instance UID
- AttributeDescriptor::IDENTIFIER),2);
- // |
- // AttributeDescriptor::LABEL),2);
-
-
- // Image level
- Add(LevelDescriptor("Image"));
-
- Add(AttributeDescriptor(0x0020,0x0013),3); // Image Number
-
- Add(AttributeDescriptor(0x0028,0x0010),3); // Rows
- Add(AttributeDescriptor(0x0028,0x0011),3); // Columns
- Add(AttributeDescriptor(0x0028,0x0012),3); // Planes
- Add(AttributeDescriptor(0x0028,0x0002),3); // Sample per pixels
- Add(AttributeDescriptor(0x0028,0x0008),3); // Number of Frames
- Add(AttributeDescriptor(0x0028,0x0004),3); // Photometric Interpretation
- Add(AttributeDescriptor(0x0028,0x0103),3); // Pixel Representation
-
- Add(AttributeDescriptor(0x0020,0x0032),3); // Image Position Patient
- Add(AttributeDescriptor(0x0020,0x0037),3); // Image Orientation Patient
- Add(AttributeDescriptor(0x0020,0x1041),3); // Slice Location
- Add(AttributeDescriptor(0x0028,0x0006),3); // Planar Configuration
-
- Add(AttributeDescriptor(0x0028,0x0030),3); // Pixel Spacing
- Add(AttributeDescriptor(0x0028,0x0100),3); // AlocatedBits
- Add(AttributeDescriptor(0x0028,0x0101),3); // StoredBits
-
- Add(AttributeDescriptor(0x0008,0x0008),3); // Image Type
- Add(AttributeDescriptor(0x0008,0x0023),3); // Content Date
- Add(AttributeDescriptor(0x0008,0x0033),3); // Content Time
-
- Add(AttributeDescriptor(0x0020,0x4000),3); // Image Comments
-
- Add(AttributeDescriptor(0x0004,0x1500, // File Name
- AttributeDescriptor::LABEL),3);
- Add(AttributeDescriptor(0x0028,0x1052),3); // Rescale Intercept
- Add(AttributeDescriptor(0x0028,0x1053),3); // Rescale Slope
-
- Add(AttributeDescriptor(0x0050,0x0004),3); // Calibration Image
-
- Add(AttributeDescriptor(0x0020,0x0052 // Frame Reference UID
- ),3);
- Add(AttributeDescriptor(0x0008,0x0016),3); // SOP Class UID
- Add(AttributeDescriptor("FullFileName", // Full file name
- "Full file name",
- AttributeDescriptor::IDENTIFIER),3);
-
- }
-
- //////////////////////////////////////////////////////////////
- // create a descriptor (name, attributes...) from a file) //
- // @param : file path //
- // return : - //
- //////////////////////////////////////////////////////////////
- void Descriptor::createDescriptorfromFile(const std::string &i_name)
- {
- Clear();
-
- // read file and put in buffer
- std::ifstream i_file(i_name.c_str());
- std::stringstream buffer;
- buffer << i_file.rdbuf();
- std::string line;
- bool bname;
- int ilevel = -1;
-
-
- while(std::getline(buffer, line))
- {
- if(line =="<level>")
- { //increment levels.
- ilevel++;
- bname = true;
- }
- else if(bname)
- {
- // For each level, a name to describe it
- Add(LevelDescriptor(line));
- bname = false;
- }
- else if(line.empty()) // to avoid end line
- {
- return;
- }
- else
- {
- // split line to find all tags
- std::vector<std::string> descriptors;
- std::string separator = " ";
- std::string::size_type last_pos = line.find_first_not_of(separator);
- //find first separator
- std::string::size_type pos = line.find_first_of(separator, last_pos);
- while(std::string::npos != pos || std::string::npos != last_pos)
- {
- descriptors.push_back(line.substr(last_pos, pos - last_pos));
- last_pos = line.find_first_not_of(separator, pos);
- pos = line.find_first_of(separator, last_pos);
- }
-
- // By default, the last tag is at zero and not recorded but if take in count
- unsigned int flag = 0;
- if(descriptors.size() == 4)
- {
- std::stringstream val;
- val << std::dec << descriptors[3];
- val>> flag;
- }
-
- // if Dicom tag, use "group" and "element" descriptor
- if(descriptors[0] == "D")
- { std::stringstream val, val2;
- unsigned short group;
- unsigned short element;
- val << std::dec << descriptors[1] ;
- val >> std::hex >> group;
- val2 << std::dec << descriptors[2];
- val2 >> std::hex >> element;
- Add(AttributeDescriptor( group,element,flag), ilevel);
- }
-
- else if(descriptors[0].find("#") != -1)
- {
- // commented line continue to next line
- }
- else
- { boost::algorithm::replace_all(descriptors[2],"_"," ");
- Add(AttributeDescriptor( descriptors[1].c_str(),descriptors[2].c_str(),flag), ilevel);
- }
- }
- }
- }
-
- //==================================================================
-
- //==================================================================
- /// Adds a LevelDescriptor at the end of the list
- void Descriptor::Add(const LevelDescriptor& d)
- {
- mLevelDescriptorList.push_back(d);
- }
- //==================================================================
-
- //==================================================================
- /// Adds an AttributeDescriptor to level l
- void Descriptor::Add(const AttributeDescriptor& d, int l)
- {
- mLevelDescriptorList[l].Add(d);
- // TO DO : update DicomTagToName and NameToDicomTag map
- }
- //==================================================================
-
- //==================================================================
- /// Clears the Descriptor
- void Descriptor::Clear()
- {
- mLevelDescriptorList.clear();
- }
-
- //==================================================================
-
- //==================================================================
- /// Builds the key to value map of all the attributes of the tree
- void Descriptor::BuildAttributeMap( std::map<std::string,std::string>& map ) const
- {
- map.clear();
- LevelDescriptorListType::const_iterator l;
- for (l = GetLevelDescriptorList().begin();
- l!= GetLevelDescriptorList().end();
- ++l)
- {
- LevelDescriptor::AttributeDescriptorListType::const_iterator a;
- for (a = l->GetAttributeDescriptorList().begin();
- a!= l->GetAttributeDescriptorList().end();
- ++a)
- {
- map[a->GetKey()]="";
- }
- }
- }
- }
-}
git://git.creatis.insa-lyon.fr / creaImageIO.git / blobdiff