#include <creaImageIOTreeDescriptor.h>
+#include <boost/algorithm/string/split.hpp>
+#include <boost/algorithm/string/replace.hpp>
+#include <creaImageIOSystem.h>
+#include <boost/filesystem.hpp>
+
+
+#include <fstream>
namespace creaImageIO
const unsigned int AttributeDescriptor::PRIVATE = 1;
/// The attribute enters in unique identifier constitution
const unsigned int AttributeDescriptor::IDENTIFIER = 2;
+ /// The attribute can be edited
+ const unsigned int AttributeDescriptor::EDITABLE = 3;
+ /// the attribute describes the node
const unsigned int AttributeDescriptor::LABEL = 4;
//==================================================================
// Patient level
Add(LevelDescriptor("Patient"));
- Add(AttributeDescriptor("NumberOfChildren","#Series",0),1); // Number of Series
+ Add(AttributeDescriptor("NumberOfChildren","#Series",0),1); // Number of Series
Add(AttributeDescriptor(0x0010,0x0010, // Patient name
AttributeDescriptor::LABEL),1);
Add(AttributeDescriptor(0x0010,0x0040),1); // Patient sex
Add(AttributeDescriptor(0x0010,0x0030),1); // Patient birthday
Add(AttributeDescriptor(0x0010,0x0020, // Patient ID
AttributeDescriptor::IDENTIFIER),1);
-
+
// Study-series level
Add(LevelDescriptor("Series"));
- Add(AttributeDescriptor("NumberOfChildren","#Images",0),2); // Number of images
+ Add(AttributeDescriptor("NumberOfChildren","#Images",0),2); // Number of images
Add(AttributeDescriptor(0x0008,0x0060, // Modality
AttributeDescriptor::LABEL),2);
Add(AttributeDescriptor(0x0008,0x1030),2); // Study Description
Add(AttributeDescriptor(0x0008,0x103E),2); // Description
Add(AttributeDescriptor(0x0008,0x0080),2); // Institution Name
Add(AttributeDescriptor(0x0008,0x0081),2); // Institution Adress
- Add(AttributeDescriptor(0x0008,0x1010),2); // Station Name
+ Add(AttributeDescriptor(0x0008,0x1010),2); // Station Name
Add(AttributeDescriptor(0x0008,0x1048),2); // Physician of Record
Add(AttributeDescriptor(0x0008,0x1050),2); // Performing Physician's Name
Add(AttributeDescriptor(0x0018,0x1030),2); // Protocol Name
Add(AttributeDescriptor(0x0020,0x000D // Study Instance UID
),2);//AttributeDescriptor::IDENTIFIER),2);
Add(AttributeDescriptor(0x0020,0x000E, // Series Instance UID
- AttributeDescriptor::IDENTIFIER),2);
+ AttributeDescriptor::IDENTIFIER),2);
// |
- // AttributeDescriptor::LABEL),2);
+ // AttributeDescriptor::LABEL),2);
// Image level
Add(AttributeDescriptor(0x0020,0x4000),3); // Image Comments
Add(AttributeDescriptor(0x0004,0x1500, // File Name
- AttributeDescriptor::LABEL),3);
+ AttributeDescriptor::LABEL),3);
Add(AttributeDescriptor(0x0028,0x1052),3); // Rescale Intercept
Add(AttributeDescriptor(0x0028,0x1053),3); // Rescale Slope
Add(AttributeDescriptor(0x0050,0x0004),3); // Calibration Image
Add(AttributeDescriptor(0x0020,0x0052 // Frame Reference UID
- ),3);
+ ),3);
Add(AttributeDescriptor(0x0008,0x0016),3); // SOP Class UID
Add(AttributeDescriptor("FullFileName", // Full file name
- "Full file name",
- AttributeDescriptor::IDENTIFIER),3);
-
-
+ "Full file name",
+ AttributeDescriptor::IDENTIFIER),3);
+
}
+
+ //////////////////////////////////////////////////////////////
+ // create a descriptor (name, attributes...) from a file) //
+ // @param : file path //
+ // return : - //
+ //////////////////////////////////////////////////////////////
+ void Descriptor::createDescriptorfromFile(const std::string &i_name)
+ {
+ Clear();
+
+ // read file and put in buffer
+ std::ifstream i_file(i_name.c_str());
+ std::stringstream buffer;
+ buffer << i_file.rdbuf();
+ std::string line;
+ bool bname;
+ int ilevel = -1;
+
+
+ while(std::getline(buffer, line))
+ {
+ if(line =="<level>")
+ { //increment levels.
+ ilevel++;
+ bname = true;
+ }
+ else if(bname)
+ {
+ // For each level, a name to describe it
+ Add(LevelDescriptor(line));
+ bname = false;
+ }
+ else
+ {
+ // split line to find all tags
+ std::vector<std::string> descriptors;
+ std::string separator = " ";
+ std::string::size_type last_pos = line.find_first_not_of(separator);
+ //find first separator
+ std::string::size_type pos = line.find_first_of(separator, last_pos);
+ while(std::string::npos != pos || std::string::npos != last_pos)
+ {
+ descriptors.push_back(line.substr(last_pos, pos - last_pos));
+ last_pos = line.find_first_not_of(separator, pos);
+ pos = line.find_first_of(separator, last_pos);
+ }
+
+ // By default, the last tag is at zero and not recorded but if take in count
+ unsigned int flag = 0;
+ if(descriptors.size() == 4)
+ {
+ std::stringstream val;
+ val << std::dec << descriptors[3];
+ val>> flag;
+ }
+
+ // if Dicom tag, use "group" and "element" descriptor
+ if(descriptors[0] == "D")
+ { std::stringstream val, val2;
+ unsigned short group;
+ unsigned short element;
+ val << std::dec << descriptors[1] ;
+ val >> std::hex >> group;
+ val2 << std::dec << descriptors[2];
+ val2 >> std::hex >> element;
+ Add(AttributeDescriptor( group,element,flag), ilevel);
+ }
+
+ else if(descriptors[0].find("#") != -1)
+ {
+ // commented line continue to next line
+ }
+ else
+ { boost::algorithm::replace_all(descriptors[2],"_"," ");
+ Add(AttributeDescriptor( descriptors[1].c_str(),descriptors[2].c_str(),flag), ilevel);
+ }
+ }
+ }
+ }
+
//==================================================================
//==================================================================
{
mLevelDescriptorList.clear();
}
+
//==================================================================
//==================================================================
}
}
}
-
}
}
git://git.creatis.insa-lyon.fr / creaImageIO.git / blobdiff