Include lib gdcm in each subfolder

[clitk.git] / tools / CMakeLists.txt

diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt
index 7145cb20e85afa7bbd14865d25aa07fe24819c2e..3bfe9dff3d737d055944cec77874395f3ab88a5e 100644 (file)
--- a/tools/CMakeLists.txt
+++ b/tools/CMakeLists.txt
@@ -1,3 +1,12 @@
+
+#=========================================================
+IF (CLITK_USE_SYSTEM_GDCM)
+  FIND_PACKAGE(GDCM REQUIRED)
+  SET(ITK_LIBRARIES ${ITK_LIBRARIES} gdcmDICT gdcmMSFF)
+ENDIF()
+  
+
+#=========================================================
 # Add Libraries used in vv and clitk to avoid recompilation
 WRAP_GGO(clitkCropImage_GGO_C clitkCropImage.ggo)
 ADD_LIBRARY(clitkCropImageLib clitkCropImageGenericFilter.cxx ${clitkCropImage_GGO_C})
@@ -11,6 +20,9 @@ ADD_LIBRARY(clitkBinarizeImageLib clitkBinarizeImageGenericFilter.cxx ${clitkBin
 WRAP_GGO(clitkImageArithm_GGO_C clitkImageArithm.ggo)
 ADD_LIBRARY(clitkImageArithmImageLib clitkImageArithmGenericFilter.cxx ${clitkImageArithm_GGO_C})
 
+WRAP_GGO(clitkVectorArithm_GGO_C clitkVectorArithm.ggo)
+ADD_LIBRARY(clitkVectorArithmLib clitkVectorArithmGenericFilter.cxx ${clitkVectorArithm_GGO_C})
+
 WRAP_GGO(clitkResampleImage_GGO_C clitkResampleImage.ggo)
 ADD_LIBRARY(clitkResampleImageLib clitkResampleImageGenericFilter.cxx ${clitkResampleImage_GGO_C})
 
@@ -24,6 +36,10 @@ IF (CLITK_BUILD_TOOLS)
   WRAP_GGO(clitkDicomInfo_GGO_C clitkDicomInfo.ggo)
   ADD_EXECUTABLE(clitkDicomInfo clitkDicomInfo.cxx ${clitkDicomInfo_GGO_C})
   TARGET_LINK_LIBRARIES(clitkDicomInfo clitkCommon ${ITK_LIBRARIES})
+  # set_target_properties(clitkDicomInfo
+  #   PROPERTIES
+  #   LINK_INTERFACE_LIBRARIES ""
+  #   )
   SET(TOOLS_INSTALL clitkDicomInfo)
 
   WRAP_GGO(clitkDicom2Image_GGO_C clitkDicom2Image.ggo)
@@ -54,6 +70,11 @@ IF (CLITK_BUILD_TOOLS)
   TARGET_LINK_LIBRARIES(clitkVFResample clitkCommon ${ITK_LIBRARIES})
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVFResample)
 
+  WRAP_GGO(clitkVFInterpolate_GGO_C clitkVFInterpolate.ggo)
+  ADD_EXECUTABLE(clitkVFInterpolate clitkVFInterpolate.cxx clitkVFInterpolateGenericFilter.cxx ${clitkVFInterpolate_GGO_C})
+  TARGET_LINK_LIBRARIES(clitkVFInterpolate clitkCommon ${ITK_LIBRARIES})
+  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVFInterpolate)
+
   WRAP_GGO(clitkImageCreate_GGO_C clitkImageCreate.ggo)
   ADD_EXECUTABLE(clitkImageCreate clitkImageCreate.cxx ${clitkImageCreate_GGO_C})
   TARGET_LINK_LIBRARIES(clitkImageCreate clitkCommon  ${ITK_LIBRARIES})
@@ -87,7 +108,7 @@ IF (CLITK_BUILD_TOOLS)
 
   WRAP_GGO(clitkInvertVF_GGO_C clitkInvertVF.ggo)
   ADD_EXECUTABLE(clitkInvertVF clitkInvertVF.cxx ${clitkInvertVF_GGO_C})
-  TARGET_LINK_LIBRARIES(clitkInvertVF clitkCommon ${ITK_LIBRARIES} )
+  TARGET_LINK_LIBRARIES(clitkInvertVF clitkCommon ${ITK_LIBRARIES})
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkInvertVF)
 
   WRAP_GGO(clitkAffineTransform_GGO_C clitkAffineTransform.ggo)
@@ -109,6 +130,10 @@ IF (CLITK_BUILD_TOOLS)
   TARGET_LINK_LIBRARIES(clitkImageArithm clitkImageArithmImageLib clitkCommon ${ITK_LIBRARIES} )
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageArithm)
 
+  ADD_EXECUTABLE(clitkVectorArithm clitkVectorArithm.cxx)
+  TARGET_LINK_LIBRARIES(clitkVectorArithm clitkVectorArithmLib clitkCommon ${ITK_LIBRARIES} )
+  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVectorArithm)
+
   WRAP_GGO(clitkUnsharpMask_GGO_C clitkUnsharpMask.ggo)
   ADD_EXECUTABLE(clitkUnsharpMask clitkUnsharpMask.cxx ${clitkUnsharpMask_GGO_C})
   TARGET_LINK_LIBRARIES(clitkUnsharpMask clitkCommon ${ITK_LIBRARIES} ) 
@@ -143,6 +168,12 @@ IF (CLITK_BUILD_TOOLS)
   TARGET_LINK_LIBRARIES(clitkDicomRTStruct2Image clitkDicomRTStruct clitkCommon ${ITK_LIBRARIES} )
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTStruct2Image)
 
+  IF(CLITK_USE_SYSTEM_GDCM)
+    WRAP_GGO(clitkImage2DicomRTStruct_GGO_C clitkImage2DicomRTStruct.ggo)
+    ADD_EXECUTABLE(clitkImage2DicomRTStruct clitkImage2DicomRTStruct.cxx ${clitkImage2DicomRTStruct_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkImage2DicomRTStruct clitkDicomRTStruct clitkCommon ${ITK_LIBRARIES} ${CLITK_GDCM_LIBRARIES})
+  ENDIF()
+
   WRAP_GGO(clitkComposeVF_GGO_C clitkComposeVF.ggo)
   ADD_EXECUTABLE(clitkComposeVF clitkComposeVFGenericFilter.cxx clitkComposeVF.cxx ${clitkComposeVF_GGO_C})
   TARGET_LINK_LIBRARIES(clitkComposeVF ${ITK_LIBRARIES} clitkCommon)
@@ -155,7 +186,7 @@ IF (CLITK_BUILD_TOOLS)
 
   WRAP_GGO(clitkBackProjectImage_GGO_C clitkBackProjectImage.ggo)
   ADD_EXECUTABLE(clitkBackProjectImage clitkBackProjectImage.cxx clitkBackProjectImageGenericFilter.cxx ${clitkBackProjectImage_GGO_C})
-  TARGET_LINK_LIBRARIES(clitkBackProjectImage ${ITK_LIBRARIES} clitkCommon )
+  TARGET_LINK_LIBRARIES(clitkBackProjectImage clitkCommon ${ITK_LIBRARIES})
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBackProjectImage)
 
   ADD_EXECUTABLE(clitkCropImage clitkCropImage.cxx ${clitkCropImage_GGO_C})
@@ -208,9 +239,14 @@ IF (CLITK_BUILD_TOOLS)
 
   WRAP_GGO(clitkTransformLandmarks_GGO_C clitkTransformLandmarks.ggo)
   ADD_EXECUTABLE(clitkTransformLandmarks clitkTransformLandmarks.cxx ${clitkTransformLandmarks_GGO_C})
-  TARGET_LINK_LIBRARIES(clitkTransformLandmarks clitkCommon ${ITK_LIBRARIES})
+  TARGET_LINK_LIBRARIES(clitkTransformLandmarks clitkCommon ${ITK_LIBRARIES} ${VTK_LIBRARIES})
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkTransformLandmarks)
 
+  WRAP_GGO(clitkMaskLandmarks_GGO_C clitkMaskLandmarks.ggo)
+  ADD_EXECUTABLE(clitkMaskLandmarks clitkMaskLandmarks.cxx ${clitkMaskLandmarks_GGO_C})
+  TARGET_LINK_LIBRARIES(clitkMaskLandmarks clitkCommon ${ITK_LIBRARIES})
+  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMaskLandmarks)
+
   ADD_EXECUTABLE(clitkMakeSphereImage clitkMakeSphereImage.cxx) # clitkLineProfileGenericFilter.cxx ${clitkLineProfile_GGO_C})
   TARGET_LINK_LIBRARIES(clitkMakeSphereImage clitkCommon ${ITK_LIBRARIES})
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMakeSphereImage)
@@ -233,7 +269,7 @@ IF (CLITK_BUILD_TOOLS)
   IF(CLITK_EXPERIMENTAL)
     WRAP_GGO(clitkBinaryImageToMesh_GGO_C clitkBinaryImageToMesh.ggo)
     ADD_EXECUTABLE(clitkBinaryImageToMesh clitkBinaryImageToMesh.cxx ${clitkBinaryImageToMesh_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkBinaryImageToMesh itksys ${VTK_LIBRARIES})
+    TARGET_LINK_LIBRARIES(clitkBinaryImageToMesh itksys ${ITK_LIBRARIES} ${VTK_LIBRARIES})
     SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBinaryImageToMesh)
 
     WRAP_GGO(clitkMeshToBinaryImage_GGO_C clitkMeshToBinaryImage.ggo)
@@ -243,7 +279,7 @@ IF (CLITK_BUILD_TOOLS)
 
     WRAP_GGO(clitkMeshViewer_GGO_C clitkMeshViewer.ggo)
     ADD_EXECUTABLE(clitkMeshViewer clitkMeshViewer.cxx ${clitkMeshViewer_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkMeshViewer ${VTK_LIBRARIES})
+    TARGET_LINK_LIBRARIES(clitkMeshViewer ${ITK_LIBRARIES} ${VTK_LIBRARIES})
     SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMeshViewer)
   ENDIF(CLITK_EXPERIMENTAL)
 
@@ -256,7 +292,6 @@ IF (CLITK_BUILD_TOOLS)
     SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTPlan2Gate)
   ENDIF(ITK_VERSION_MAJOR VERSION_LESS 4)
 
-  SET_TARGET_PROPERTIES(${TOOLS_INSTALL} PROPERTIES INSTALL_RPATH "${VTK_DIR}:${ITK_DIR}" )  
   INSTALL (TARGETS ${TOOLS_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
 
 ENDIF(CLITK_BUILD_TOOLS)