]> Creatis software - clitk.git/blobdiff - tools/CMakeLists.txt
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Add clitkExtrude tool
[clitk.git] / tools / CMakeLists.txt
diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt
index fbab5f54cfd300f8eb61f1780f30565328020af9..4259e19439bc678a3e577ac95e1b46f1bb8f455f 100644 (file)
--- a/tools/CMakeLists.txt
+++ b/tools/CMakeLists.txt
@@ -12,15 +12,15 @@ add_library(clitkBinarizeImageLib clitkBinarizeImageGenericFilter.cxx ${clitkBin
 WRAP_GGO(clitkProfileImage_GGO_C clitkProfileImage.ggo)
 add_library(clitkProfileImageLib clitkProfileImageGenericFilter.cxx ${clitkProfileImage_GGO_C})
 
+WRAP_GGO(clitkHistogramImage_GGO_C clitkHistogramImage.ggo)
+add_library(clitkHistogramImageLib clitkHistogramImageGenericFilter.cxx ${clitkHistogramImage_GGO_C})
+
 WRAP_GGO(clitkImageArithm_GGO_C clitkImageArithm.ggo)
 add_library(clitkImageArithmImageLib clitkImageArithmGenericFilter.cxx ${clitkImageArithm_GGO_C})
 
 WRAP_GGO(clitkVectorArithm_GGO_C clitkVectorArithm.ggo)
 add_library(clitkVectorArithmLib clitkVectorArithmGenericFilter.cxx ${clitkVectorArithm_GGO_C})
 
-WRAP_GGO(clitkResampleImage_GGO_C clitkResampleImage.ggo)
-add_library(clitkResampleImageLib clitkResampleImageGenericFilter.cxx ${clitkResampleImage_GGO_C})
-
 WRAP_GGO(clitkMIP_GGO_C clitkMIP.ggo)
 add_library(clitkMIPLib clitkMIPGenericFilter.cxx ${clitkMIP_GGO_C})
 
@@ -61,11 +61,15 @@ if(CLITK_BUILD_TOOLS)
   add_executable(clitkBinarizeImage clitkBinarizeImage.cxx)
   target_link_libraries(clitkBinarizeImage clitkBinarizeImageLib clitkCommon)
   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBinarizeImage)
-  
+
   add_executable(clitkProfileImage clitkProfileImage.cxx)
   target_link_libraries(clitkProfileImage clitkProfileImageLib clitkCommon)
   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkProfileImage)
 
+  add_executable(clitkHistogramImage clitkHistogramImage.cxx)
+  target_link_libraries(clitkHistogramImage clitkHistogramImageLib clitkCommon)
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkHistogramImage)
+
   WRAP_GGO(clitkVFResample_GGO_C clitkVFResample.ggo)
   add_executable(clitkVFResample clitkVFResample.cxx clitkVFResampleGenericFilter.cxx ${clitkVFResample_GGO_C})
   target_link_libraries(clitkVFResample clitkCommon)
@@ -95,6 +99,36 @@ if(CLITK_BUILD_TOOLS)
   add_executable(clitkWriteDicomSeries clitkWriteDicomSeries.cxx ${clitkWriteDicomSeries_GGO_C})
   target_link_libraries(clitkWriteDicomSeries clitkCommon )
   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkWriteDicomSeries)
+  
+  WRAP_GGO(clitkSpect2Dicom_GGO_C clitkSpect2Dicom.ggo)
+  add_executable(clitkSpect2Dicom clitkSpect2Dicom.cxx ${clitkSpect2Dicom_GGO_C})
+  target_link_libraries(clitkSpect2Dicom clitkCommon )
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSpect2Dicom)
+
+  WRAP_GGO(clitkChangeDicomTag_GGO_C clitkChangeDicomTag.ggo)
+  add_executable(clitkChangeDicomTag clitkChangeDicomTag.cxx ${clitkChangeDicomTag_GGO_C})
+  target_link_libraries(clitkChangeDicomTag clitkCommon )
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkChangeDicomTag)
+
+  WRAP_GGO(clitkGateSimulation2Dicom_GGO_C clitkGateSimulation2Dicom.ggo)
+  add_executable(clitkGateSimulation2Dicom clitkGateSimulation2Dicom.cxx ${clitkGateSimulation2Dicom_GGO_C})
+  target_link_libraries(clitkGateSimulation2Dicom clitkCommon )
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkGateSimulation2Dicom)
+
+  WRAP_GGO(clitkPartitionEnergyWindowDicom_GGO_C clitkPartitionEnergyWindowDicom.ggo)
+  add_executable(clitkPartitionEnergyWindowDicom clitkPartitionEnergyWindowDicom.cxx ${clitkPartitionEnergyWindowDicom_GGO_C})
+  target_link_libraries(clitkPartitionEnergyWindowDicom clitkCommon )
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkPartitionEnergyWindowDicom)
+
+  WRAP_GGO(clitkUpdateVRTagDicom_GGO_C clitkUpdateVRTagDicom.ggo)
+  add_executable(clitkUpdateVRTagDicom clitkUpdateVRTagDicom.cxx ${clitkUpdateVRTagDicom_GGO_C})
+  target_link_libraries(clitkUpdateVRTagDicom clitkCommon )
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkUpdateVRTagDicom)
+
+  WRAP_GGO(clitkImage2DicomDose_GGO_C clitkImage2DicomDose.ggo)
+  add_executable(clitkImage2DicomDose clitkImage2DicomDose.cxx ${clitkImage2DicomDose_GGO_C})
+  target_link_libraries(clitkImage2DicomDose clitkCommon)
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImage2DicomDose)
 
   WRAP_GGO(clitkMedianTemporalDimension_GGO_C clitkMedianTemporalDimension.ggo)
   add_executable(clitkMedianTemporalDimension clitkMedianTemporalDimension.cxx
@@ -113,13 +147,14 @@ if(CLITK_BUILD_TOOLS)
   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkInvertVF)
 
   WRAP_GGO(clitkAffineTransform_GGO_C clitkAffineTransform.ggo)
+  add_library(clitkAffineTransformLib clitkAffineTransform.cxx ${clitkAffineTransform_GGO_C})
   add_executable(clitkAffineTransform clitkAffineTransform.cxx ${clitkAffineTransform_GGO_C})
   target_link_libraries(clitkAffineTransform clitkCommon )
   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAffineTransform)
 
   WRAP_GGO(clitkElastixTransformToMatrix_GGO_C clitkElastixTransformToMatrix.ggo)
   add_executable(clitkElastixTransformToMatrix clitkElastixTransformToMatrix.cxx ${clitkElastixTransformToMatrix_GGO_C})
-  target_link_libraries(clitkElastixTransformToMatrix clitkCommon )
+  target_link_libraries(clitkElastixTransformToMatrix clitkAffineTransformLib clitkCommon )
   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkElastixTransformToMatrix)
 
   WRAP_GGO(clitkMatrixToElastixTransform_GGO_C clitkMatrixToElastixTransform.ggo)
@@ -165,10 +200,6 @@ if(CLITK_BUILD_TOOLS)
   target_link_libraries(clitkMedianImageFilter clitkMedianImageFilterLib clitkCommon)
   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMedianImageFilter)
 
-  add_executable(clitkResampleImage clitkResampleImage.cxx)
-  target_link_libraries(clitkResampleImage clitkResampleImageLib clitkCommon)
-  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkResampleImage)
-
   WRAP_GGO(clitkMinMaxMask_GGO_C clitkMinMaxMask.ggo)
   add_executable(clitkMinMaxMask clitkMinMaxMask.cxx ${clitkMinMaxMask_GGO_C})
   target_link_libraries(clitkMinMaxMask clitkCommon  )
@@ -188,6 +219,11 @@ if(CLITK_BUILD_TOOLS)
     WRAP_GGO(clitkImage2DicomRTStruct_GGO_C clitkImage2DicomRTStruct.ggo)
     add_executable(clitkImage2DicomRTStruct clitkImage2DicomRTStruct.cxx ${clitkImage2DicomRTStruct_GGO_C})
     target_link_libraries(clitkImage2DicomRTStruct clitkDicomRTStruct)
+
+    #include pugiXML to parse XML
+    WRAP_GGO(clitkXml2DicomRTStruct_GGO_C clitkXml2DicomRTStruct.ggo)
+    add_executable(clitkXml2DicomRTStruct ../utilities/pugixml/pugixml.cpp clitkXml2DicomRTStruct.cxx ${clitkXml2DicomRTStruct_GGO_C})
+    target_link_libraries(clitkXml2DicomRTStruct clitkDicomRTStruct)
   endif()
 
   WRAP_GGO(clitkComposeVF_GGO_C clitkComposeVF.ggo)
@@ -248,6 +284,16 @@ if(CLITK_BUILD_TOOLS)
   add_executable(clitkVectorImageToImage  clitkVectorImageToImage.cxx clitkVectorImageToImageGenericFilter.cxx ${clitkVectorImageToImage_GGO_C})
   target_link_libraries(clitkVectorImageToImage  clitkCommon)
   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVectorImageToImage)
+  
+  WRAP_GGO(clitkNVectorImageTo4DImage_GGO_C clitkNVectorImageTo4DImage.ggo)
+  add_executable(clitkNVectorImageTo4DImage  clitkNVectorImageTo4DImage.cxx clitkNVectorImageTo4DImageGenericFilter.cxx ${clitkNVectorImageTo4DImage_GGO_C})
+  target_link_libraries(clitkNVectorImageTo4DImage  clitkCommon)
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkNVectorImageTo4DImage)
+
+  WRAP_GGO(clitk4DImageToNVectorImage_GGO_C clitk4DImageToNVectorImage.ggo)
+  add_executable(clitk4DImageToNVectorImage  clitk4DImageToNVectorImage.cxx clitk4DImageToNVectorImageGenericFilter.cxx ${clitk4DImageToNVectorImage_GGO_C})
+  target_link_libraries(clitk4DImageToNVectorImage  clitkCommon)
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitk4DImageToNVectorImage)
 
   add_executable(clitkMIP clitkMIP.cxx clitkMIPGenericFilter.cxx)
   target_link_libraries(clitkMIP clitkMIPLib clitkCommon)
@@ -258,6 +304,11 @@ if(CLITK_BUILD_TOOLS)
   target_link_libraries(clitkSum clitkCommon)
   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkSum)
 
+  WRAP_GGO(clitkExtrude_GGO_C clitkExtrude.ggo)
+  add_executable(clitkExtrude clitkExtrude.cxx ${clitkExtrude_GGO_C})
+  target_link_libraries(clitkExtrude clitkCommon)
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkExtrude)
+
   WRAP_GGO(clitkTransformLandmarks_GGO_C clitkTransformLandmarks.ggo)
   add_executable(clitkTransformLandmarks clitkTransformLandmarks.cxx ${clitkTransformLandmarks_GGO_C})
   target_link_libraries(clitkTransformLandmarks clitkCommon)
@@ -327,6 +378,12 @@ if(CLITK_BUILD_TOOLS)
   target_link_libraries(clitkImageIntensityWindowing clitkCommon )
   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageIntensityWindowing)
 
+  WRAP_GGO(clitkMaskOfIntegratedIntensity_GGO_C clitkMaskOfIntegratedIntensity.ggo)
+  add_executable(clitkMaskOfIntegratedIntensity clitkMaskOfIntegratedIntensity.cxx ${clitkMaskOfIntegratedIntensity_GGO_C})
+  target_link_libraries(clitkMaskOfIntegratedIntensity clitkCommon )
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMaskOfIntegratedIntensity)
+
+
   WRAP_GGO(clitkBlurImage_GGO_C clitkBlurImage.ggo)
   add_executable(clitkBlurImage clitkBlurImage.cxx ${clitkBlurImage_GGO_C})
   target_link_libraries(clitkBlurImage clitkCommon )
@@ -373,20 +430,15 @@ if(CLITK_BUILD_TOOLS)
 
 
   #=========================================================
-  if(ITK_VERSION_MAJOR VERSION_LESS 4)
-    message("clitkDice is not compatible with ITK<4. It will not be built.")
-    message("clitkDicomRTPlan2Gate is not compatible with GDCM<2 (ITK<4). It will not be built.")
-  else(ITK_VERSION_MAJOR VERSION_LESS 4)
-    WRAP_GGO(clitkDice_GGO_C clitkDice.ggo)
-    add_executable(clitkDice clitkDice.cxx ${clitkDice_GGO_C})
-    target_link_libraries(clitkDice clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES} )
-    set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDice)
-
-    WRAP_GGO(clitkDicomRTPlan2Gate_GGO_C clitkDicomRTPlan2Gate.ggo)
-    add_executable(clitkDicomRTPlan2Gate clitkDicomRTPlan2Gate.cxx clitkDicomRTPlan2Gate_ggo.c)
-    target_link_libraries(clitkDicomRTPlan2Gate clitkCommon)
-    set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTPlan2Gate)
-  endif(ITK_VERSION_MAJOR VERSION_LESS 4)
+  WRAP_GGO(clitkDice_GGO_C clitkDice.ggo)
+  add_executable(clitkDice clitkDice.cxx ${clitkDice_GGO_C})
+  target_link_libraries(clitkDice clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES} )
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDice)
+
+  WRAP_GGO(clitkDicomRTPlan2Gate_GGO_C clitkDicomRTPlan2Gate.ggo)
+  add_executable(clitkDicomRTPlan2Gate clitkDicomRTPlan2Gate.cxx clitkDicomRTPlan2Gate_ggo.c)
+  target_link_libraries(clitkDicomRTPlan2Gate clitkCommon)
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTPlan2Gate)
   #=========================================================
 
 
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