Allow to correct for dicom with negative spacing (dcm to mhd)

[clitk.git] / tools / CMakeLists.txt

diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt
index c3984c3d68b8d40377b592ef7d282aa7cae70dd1..429b75197c3323bdc4bf7c1f812b463cc1c62389 100644 (file)
--- a/tools/CMakeLists.txt
+++ b/tools/CMakeLists.txt
@@ -36,6 +36,11 @@ IF (CLITK_BUILD_TOOLS)
   #   )
   SET(TOOLS_INSTALL clitkDicomInfo)
 
+  WRAP_GGO(clitkPointRigidRegistration_GGO_C clitkPointRigidRegistration.ggo)
+  ADD_EXECUTABLE(clitkPointRigidRegistration clitkPointRigidRegistration.cxx ${clitkPointRigidRegistration_GGO_C})
+  TARGET_LINK_LIBRARIES(clitkPointRigidRegistration clitkCommon)
+  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkPointRigidRegistration)
+
   WRAP_GGO(clitkDicom2Image_GGO_C clitkDicom2Image.ggo)
   ADD_EXECUTABLE(clitkDicom2Image clitkDicom2Image.cxx ${clitkDicom2Image_GGO_C})
   TARGET_LINK_LIBRARIES(clitkDicom2Image clitkCommon)
@@ -120,6 +125,11 @@ IF (CLITK_BUILD_TOOLS)
   TARGET_LINK_LIBRARIES(clitkMatrixToElastixTransform clitkCommon )
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMatrixToElastixTransform)
 
+  WRAP_GGO(clitkMatrixMultiply_GGO_C clitkMatrixMultiply.ggo)
+  ADD_EXECUTABLE(clitkMatrixMultiply clitkMatrixMultiply.cxx ${clitkMatrixMultiply_GGO_C})
+  TARGET_LINK_LIBRARIES(clitkMatrixMultiply clitkCommon )
+  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMatrixMultiply)
+
   WRAP_GGO(clitkMatrixInverse_GGO_C clitkMatrixInverse.ggo)
   ADD_EXECUTABLE(clitkMatrixInverse clitkMatrixInverse.cxx ${clitkMatrixInverse_GGO_C})
   TARGET_LINK_LIBRARIES(clitkMatrixInverse clitkCommon )
@@ -251,11 +261,6 @@ IF (CLITK_BUILD_TOOLS)
   TARGET_LINK_LIBRARIES(clitkTransformLandmarks clitkCommon)
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkTransformLandmarks)
 
-  WRAP_GGO(clitkDice_GGO_C clitkDice.ggo)
-  ADD_EXECUTABLE(clitkDice clitkDice.cxx ${clitkDice_GGO_C})
-  TARGET_LINK_LIBRARIES(clitkDice clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES} )
-  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDice)
-
   WRAP_GGO(clitkMaskLandmarks_GGO_C clitkMaskLandmarks.ggo)
   ADD_EXECUTABLE(clitkMaskLandmarks clitkMaskLandmarks.cxx ${clitkMaskLandmarks_GGO_C})
   TARGET_LINK_LIBRARIES(clitkMaskLandmarks clitkCommon)
@@ -300,11 +305,30 @@ IF (CLITK_BUILD_TOOLS)
   TARGET_LINK_LIBRARIES(clitkImageUncertainty clitkCommon ${ITK_LIBRARIES})
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageUncertainty)
 
+  WRAP_GGO(clitkNormalizeImageFilter_GGO_C clitkNormalizeImageFilter.ggo)
+  ADD_EXECUTABLE(clitkNormalizeImageFilter clitkNormalizeImageFilter.cxx ${clitkNormalizeImageFilter_GGO_C})
+  TARGET_LINK_LIBRARIES(clitkNormalizeImageFilter clitkCommon )
+  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkNormalizeImageFilter)
+
   WRAP_GGO(clitkImageGradientMagnitude_GGO_C clitkImageGradientMagnitude.ggo)
   ADD_EXECUTABLE(clitkImageGradientMagnitude clitkImageGradientMagnitude.cxx ${clitkImageGradientMagnitude_GGO_C})
   TARGET_LINK_LIBRARIES(clitkImageGradientMagnitude clitkCommon )
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageGradientMagnitude)
 
+  WRAP_GGO(clitkImageLaplacian_GGO_C clitkImageLaplacian.ggo)
+  ADD_EXECUTABLE(clitkImageLaplacian clitkImageLaplacian.cxx ${clitkImageLaplacian_GGO_C})
+  TARGET_LINK_LIBRARIES(clitkImageLaplacian clitkCommon )
+  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageLaplacian)
+
+  WRAP_GGO(clitkImageIntensityWindowing_GGO_C clitkImageIntensityWindowing.ggo)
+  ADD_EXECUTABLE(clitkImageIntensityWindowing clitkImageIntensityWindowing.cxx ${clitkImageIntensityWindowing_GGO_C})
+  TARGET_LINK_LIBRARIES(clitkImageIntensityWindowing clitkCommon )
+  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageIntensityWindowing)
+
+  WRAP_GGO(clitkBlurImage_GGO_C clitkBlurImage.ggo)
+  ADD_EXECUTABLE(clitkBlurImage clitkBlurImage.cxx ${clitkBlurImage_GGO_C})
+  TARGET_LINK_LIBRARIES(clitkBlurImage clitkCommon )
+  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBlurImage)
 
   #=========================================================
   option(CLITK_USE_ROOT "Build experimental tools using root" OFF)
@@ -348,8 +372,14 @@ IF (CLITK_BUILD_TOOLS)
 
   #=========================================================
   IF(ITK_VERSION_MAJOR VERSION_LESS 4)
+    MESSAGE("clitkDice is not compatible with ITK<4. It will not be built.")
     MESSAGE("clitkDicomRTPlan2Gate is not compatible with GDCM<2 (ITK<4). It will not be built.")
   ELSE(ITK_VERSION_MAJOR VERSION_LESS 4)
+    WRAP_GGO(clitkDice_GGO_C clitkDice.ggo)
+    ADD_EXECUTABLE(clitkDice clitkDice.cxx ${clitkDice_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkDice clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES} )
+    SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDice)
+
     WRAP_GGO(clitkDicomRTPlan2Gate_GGO_C clitkDicomRTPlan2Gate.ggo)
     ADD_EXECUTABLE(clitkDicomRTPlan2Gate clitkDicomRTPlan2Gate.cxx clitkDicomRTPlan2Gate_ggo.c)
     TARGET_LINK_LIBRARIES(clitkDicomRTPlan2Gate clitkCommon)