Merge branch 'clitkImage2Dicom'

[clitk.git] / tools / CMakeLists.txt

diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt
index 515e99a9aef9ecda238d7938e663a0d9f3664822..9af9f16bc0e3741c44198c3f421c99b291c5fe7c 100644 (file)
--- a/tools/CMakeLists.txt
+++ b/tools/CMakeLists.txt
@@ -21,9 +21,6 @@ add_library(clitkImageArithmImageLib clitkImageArithmGenericFilter.cxx ${clitkIm
 WRAP_GGO(clitkVectorArithm_GGO_C clitkVectorArithm.ggo)
 add_library(clitkVectorArithmLib clitkVectorArithmGenericFilter.cxx ${clitkVectorArithm_GGO_C})
 
-WRAP_GGO(clitkResampleImage_GGO_C clitkResampleImage.ggo)
-add_library(clitkResampleImageLib clitkResampleImageGenericFilter.cxx ${clitkResampleImage_GGO_C})
-
 WRAP_GGO(clitkMIP_GGO_C clitkMIP.ggo)
 add_library(clitkMIPLib clitkMIPGenericFilter.cxx ${clitkMIP_GGO_C})
 
@@ -64,11 +61,15 @@ if(CLITK_BUILD_TOOLS)
   add_executable(clitkBinarizeImage clitkBinarizeImage.cxx)
   target_link_libraries(clitkBinarizeImage clitkBinarizeImageLib clitkCommon)
   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBinarizeImage)
-  
+
   add_executable(clitkProfileImage clitkProfileImage.cxx)
   target_link_libraries(clitkProfileImage clitkProfileImageLib clitkCommon)
   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkProfileImage)
 
+  add_executable(clitkHistogramImage clitkHistogramImage.cxx)
+  target_link_libraries(clitkHistogramImage clitkHistogramImageLib clitkCommon)
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkHistogramImage)
+
   WRAP_GGO(clitkVFResample_GGO_C clitkVFResample.ggo)
   add_executable(clitkVFResample clitkVFResample.cxx clitkVFResampleGenericFilter.cxx ${clitkVFResample_GGO_C})
   target_link_libraries(clitkVFResample clitkCommon)
@@ -104,6 +105,31 @@ if(CLITK_BUILD_TOOLS)
   target_link_libraries(clitkImage2DicomSeries clitkCommon )
   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImage2DicomSeries)
 
+  WRAP_GGO(clitkChangeDicomTag_GGO_C clitkChangeDicomTag.ggo)
+  add_executable(clitkChangeDicomTag clitkChangeDicomTag.cxx ${clitkChangeDicomTag_GGO_C})
+  target_link_libraries(clitkChangeDicomTag clitkCommon )
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkChangeDicomTag)
+
+  WRAP_GGO(clitkGateSimulation2Dicom_GGO_C clitkGateSimulation2Dicom.ggo)
+  add_executable(clitkGateSimulation2Dicom clitkGateSimulation2Dicom.cxx ${clitkGateSimulation2Dicom_GGO_C})
+  target_link_libraries(clitkGateSimulation2Dicom clitkCommon )
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkGateSimulation2Dicom)
+
+  WRAP_GGO(clitkPartitionEnergyWindowDicom_GGO_C clitkPartitionEnergyWindowDicom.ggo)
+  add_executable(clitkPartitionEnergyWindowDicom clitkPartitionEnergyWindowDicom.cxx ${clitkPartitionEnergyWindowDicom_GGO_C})
+  target_link_libraries(clitkPartitionEnergyWindowDicom clitkCommon )
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkPartitionEnergyWindowDicom)
+
+  WRAP_GGO(clitkUpdateVRTagDicom_GGO_C clitkUpdateVRTagDicom.ggo)
+  add_executable(clitkUpdateVRTagDicom clitkUpdateVRTagDicom.cxx ${clitkUpdateVRTagDicom_GGO_C})
+  target_link_libraries(clitkUpdateVRTagDicom clitkCommon )
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkUpdateVRTagDicom)
+
+  WRAP_GGO(clitkImage2DicomDose_GGO_C clitkImage2DicomDose.ggo)
+  add_executable(clitkImage2DicomDose clitkImage2DicomDose.cxx ${clitkImage2DicomDose_GGO_C})
+  target_link_libraries(clitkImage2DicomDose clitkCommon)
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImage2DicomDose)
+
   WRAP_GGO(clitkMedianTemporalDimension_GGO_C clitkMedianTemporalDimension.ggo)
   add_executable(clitkMedianTemporalDimension clitkMedianTemporalDimension.cxx
     ${clitkMedianTemporalDimension_GGO_C})
@@ -173,10 +199,6 @@ if(CLITK_BUILD_TOOLS)
   target_link_libraries(clitkMedianImageFilter clitkMedianImageFilterLib clitkCommon)
   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMedianImageFilter)
 
-  add_executable(clitkResampleImage clitkResampleImage.cxx)
-  target_link_libraries(clitkResampleImage clitkResampleImageLib clitkCommon)
-  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkResampleImage)
-
   WRAP_GGO(clitkMinMaxMask_GGO_C clitkMinMaxMask.ggo)
   add_executable(clitkMinMaxMask clitkMinMaxMask.cxx ${clitkMinMaxMask_GGO_C})
   target_link_libraries(clitkMinMaxMask clitkCommon  )
@@ -192,11 +214,16 @@ if(CLITK_BUILD_TOOLS)
   target_link_libraries(clitkDicomRTStruct2Image clitkDicomRTStruct)
   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTStruct2Image)
 
-  #if(CLITK_USE_SYSTEM_GDCM)
+  if(CLITK_USE_SYSTEM_GDCM)
     WRAP_GGO(clitkImage2DicomRTStruct_GGO_C clitkImage2DicomRTStruct.ggo)
     add_executable(clitkImage2DicomRTStruct clitkImage2DicomRTStruct.cxx ${clitkImage2DicomRTStruct_GGO_C})
     target_link_libraries(clitkImage2DicomRTStruct clitkDicomRTStruct)
-  #endif()
+
+    #include pugiXML to parse XML
+    WRAP_GGO(clitkXml2DicomRTStruct_GGO_C clitkXml2DicomRTStruct.ggo)
+    add_executable(clitkXml2DicomRTStruct ../utilities/pugixml/pugixml.cpp clitkXml2DicomRTStruct.cxx ${clitkXml2DicomRTStruct_GGO_C})
+    target_link_libraries(clitkXml2DicomRTStruct clitkDicomRTStruct)
+  endif()
 
   WRAP_GGO(clitkComposeVF_GGO_C clitkComposeVF.ggo)
   add_executable(clitkComposeVF clitkComposeVFGenericFilter.cxx clitkComposeVF.cxx ${clitkComposeVF_GGO_C})
@@ -345,6 +372,12 @@ if(CLITK_BUILD_TOOLS)
   target_link_libraries(clitkImageIntensityWindowing clitkCommon )
   set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageIntensityWindowing)
 
+  WRAP_GGO(clitkMaskOfIntegratedIntensity_GGO_C clitkMaskOfIntegratedIntensity.ggo)
+  add_executable(clitkMaskOfIntegratedIntensity clitkMaskOfIntegratedIntensity.cxx ${clitkMaskOfIntegratedIntensity_GGO_C})
+  target_link_libraries(clitkMaskOfIntegratedIntensity clitkCommon )
+  set(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMaskOfIntegratedIntensity)
+
+
   WRAP_GGO(clitkBlurImage_GGO_C clitkBlurImage.ggo)
   add_executable(clitkBlurImage clitkBlurImage.cxx ${clitkBlurImage_GGO_C})
   target_link_libraries(clitkBlurImage clitkCommon )