]> Creatis software - clitk.git/blobdiff - tools/CMakeLists.txt
Bug #292
[clitk.git] / tools / CMakeLists.txt
index 3550c484172f8e8e538193abc99391091d91ca1d..cc77ea3a332a9cd2eff93ab88e89b82ffc8a86ce 100644 (file)
@@ -1,41 +1,46 @@
 #=========================================================
 INCLUDE(${PROJECT_SOURCE_DIR}/cmake/common.cmake)
 #=========================================================
-#Add your ggo files to this list if they are used by vv
-FOREACH(clitkTool clitkAffineTransform clitkBinarizeImage clitkImageArithm
-        clitkMedianImageFilter)
-    WRAP_GGO(${clitkTool}_GGO_C ${clitkTool}.ggo)
-    SET(GGO_C_FILES ${GGO_C_FILES} ${${clitkTool}_GGO_C})
-ENDFOREACH(clitkTool)
-ADD_LIBRARY(clitkToolsGgoLib ${GGO_C_FILES})
 
-#=========================================================
-#the libraries avoid recompilation for vv, and should be used for generic filters
-#with long compilation times that are used by vv
-ADD_LIBRARY(clitkImageConvertLib clitkImageConvertGenericFilter.cxx)
-ADD_LIBRARY(clitkImageResampleLib clitkImageResampleGenericFilter.cxx)
+# Add Libraries used in vv and clitk to avoid recompilation
+WRAP_GGO(clitkCropImage_GGO_C clitkCropImage.ggo)
+ADD_LIBRARY(clitkCropImageLib clitkCropImageGenericFilter.cxx ${clitkCropImage_GGO_C})
+
+WRAP_GGO(clitkImageConvert_GGO_C clitkImageConvert.ggo)
+ADD_LIBRARY(clitkImageConvertLib clitkImageConvertGenericFilter.cxx ${clitkImageConvert_GGO_C})
+
+WRAP_GGO(clitkBinarizeImage_GGO_C clitkBinarizeImage.ggo)
+ADD_LIBRARY(clitkBinarizeImageLib clitkBinarizeImageGenericFilter.cxx ${clitkBinarizeImage_GGO_C})
+
+WRAP_GGO(clitkImageArithm_GGO_C clitkImageArithm.ggo)
+ADD_LIBRARY(clitkImageArithmImageLib clitkImageArithmGenericFilter.cxx ${clitkImageArithm_GGO_C})
+
+WRAP_GGO(clitkResampleImage_GGO_C clitkResampleImage.ggo)
+ADD_LIBRARY(clitkResampleImageLib clitkResampleImageGenericFilter.cxx ${clitkResampleImage_GGO_C})
+
+WRAP_GGO(clitkMIP_GGO_C clitkMIP.ggo)
+ADD_LIBRARY(clitkMIPLib clitkMIPGenericFilter.cxx ${clitkMIP_GGO_C})
 
 IF (CLITK_BUILD_TOOLS)
     WRAP_GGO(clitkDicomInfo_GGO_C clitkDicomInfo.ggo)
     ADD_EXECUTABLE(clitkDicomInfo clitkDicomInfo.cxx ${clitkDicomInfo_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkDicomInfo clitkCommon ITKIO) 
+    TARGET_LINK_LIBRARIES(clitkDicomInfo clitkCommon ITKIO)
+
+    WRAP_GGO(clitkDicom2Image_GGO_C clitkDicom2Image.ggo)
+    ADD_EXECUTABLE(clitkDicom2Image clitkDicom2Image.cxx ${clitkDicom2Image_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkDicom2Image clitkCommon ITKIO)
 
     WRAP_GGO(clitkImageInfo_GGO_C clitkImageInfo.ggo)
     ADD_EXECUTABLE(clitkImageInfo clitkImageInfo.cxx ${clitkImageInfo_GGO_C})
     TARGET_LINK_LIBRARIES(clitkImageInfo clitkCommon ITKIO)
 
-    ADD_EXECUTABLE(clitkImageConvert clitkImageConvert.cxx
-            ${clitkImageConvert_GGO_C})
+    ADD_EXECUTABLE(clitkImageConvert clitkImageConvert.cxx)
     TARGET_LINK_LIBRARIES(clitkImageConvert clitkImageConvertLib clitkCommon ITKIO)
 
-    # ADD_EXECUTABLE(clitkImageResample clitkImageResample.cxx
-    # ${clitkImageResample_GGO_C})
-    # TARGET_LINK_LIBRARIES(clitkImageResample clitkImageResampleLib clitkCommon ITKIO )
-
-    ADD_EXECUTABLE(clitkImageConvert clitkImageConvert.cxx clitkImageConvertGenericFilter.cxx ${clitkImageConvert_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkImageConvert clitkCommon ITKIO)
+    ADD_EXECUTABLE(clitkBinarizeImage clitkBinarizeImage.cxx)
+    TARGET_LINK_LIBRARIES(clitkBinarizeImage clitkBinarizeImageLib clitkCommon ITKIO)
 
-    WRAP_GGO(clitkVFResample_GGO_C clitkImageResample.ggo)
+    WRAP_GGO(clitkVFResample_GGO_C clitkVFResample.ggo)
     ADD_EXECUTABLE(clitkVFResample clitkVFResample.cxx clitkVFResampleGenericFilter.cxx ${clitkVFResample_GGO_C})
     TARGET_LINK_LIBRARIES(clitkVFResample clitkCommon ITKIO)
 
@@ -67,6 +72,11 @@ IF (CLITK_BUILD_TOOLS)
     ADD_EXECUTABLE(clitkAverageTemporalDimension clitkAverageTemporalDimension.cxx ${clitkAverageTemporalDimension_GGO_C})
     TARGET_LINK_LIBRARIES(clitkAverageTemporalDimension clitkCommon ITKIO )
 
+    WRAP_GGO(clitkMedianTemporalDimension_GGO_C clitkMedianTemporalDimension.ggo)
+    ADD_EXECUTABLE(clitkMedianTemporalDimension clitkMedianTemporalDimension.cxx
+        ${clitkMedianTemporalDimension_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkMedianTemporalDimension clitkCommon ITKIO )
+
     WRAP_GGO(clitkWarpImage_GGO_C clitkWarpImage.ggo)
     ADD_EXECUTABLE(clitkWarpImage clitkWarpImage.cxx ${clitkWarpImage_GGO_C} clitkWarpImageGenericFilter.cxx)
     TARGET_LINK_LIBRARIES(clitkWarpImage ITKBasicFilters clitkCommon ITKIO)
@@ -75,6 +85,7 @@ IF (CLITK_BUILD_TOOLS)
     ADD_EXECUTABLE(clitkInvertVF clitkInvertVF.cxx ${clitkInvertVF_GGO_C})
     TARGET_LINK_LIBRARIES(clitkInvertVF clitkCommon ITKIO )
 
+    WRAP_GGO(clitkAffineTransform_GGO_C clitkAffineTransform.ggo)
     ADD_EXECUTABLE(clitkAffineTransform clitkAffineTransform.cxx ${clitkAffineTransform_GGO_C})
     TARGET_LINK_LIBRARIES(clitkAffineTransform clitkCommon ITKIO )
 
@@ -86,9 +97,12 @@ IF (CLITK_BUILD_TOOLS)
     ADD_EXECUTABLE(clitkGuerreroVentilation clitkGuerreroVentilation.cxx clitkGuerreroVentilationGenericFilter.cxx ${clitkGuerreroVentilation_GGO_C})
     TARGET_LINK_LIBRARIES(clitkGuerreroVentilation clitkCommon ITKIO)
 
-    WRAP_GGO(clitkImageArithm_GGO_C clitkImageArithm.ggo)
-    ADD_EXECUTABLE(clitkImageArithm clitkImageArithm.cxx ${clitkImageArithm_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkImageArithm clitkCommon ITKIO )
+    WRAP_GGO(clitkGammaIndex_GGO_C clitkGammaIndex.ggo)
+    ADD_EXECUTABLE(clitkGammaIndex clitkGammaIndex.cxx ${clitkGammaIndex_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkGammaIndex vtkCommon vtkFiltering vtkGraphics vtkIO vtkImaging)
+
+    ADD_EXECUTABLE(clitkImageArithm clitkImageArithm.cxx)
+    TARGET_LINK_LIBRARIES(clitkImageArithm clitkImageArithmImageLib clitkCommon ITKIO )
 
     WRAP_GGO(clitkUnsharpMask_GGO_C clitkUnsharpMask.ggo)
     ADD_EXECUTABLE(clitkUnsharpMask clitkUnsharpMask.cxx ${clitkUnsharpMask_GGO_C})
@@ -98,24 +112,24 @@ IF (CLITK_BUILD_TOOLS)
     ADD_EXECUTABLE(clitkFooImage clitkFooImage.cxx ${clitkFooImage_GGO_C})
     TARGET_LINK_LIBRARIES(clitkFooImage clitkCommon ITKIO ) 
 
+    WRAP_GGO(clitkMedianImageFilter_GGO_C clitkMedianImageFilter.ggo)
     ADD_EXECUTABLE(clitkMedianImageFilter clitkMedianImageFilter.cxx ${clitkMedianImageFilter_GGO_C})
     TARGET_LINK_LIBRARIES(clitkMedianImageFilter clitkCommon ITKIO ITKBasicFilters )
 
-    WRAP_GGO(clitkResampleImage_GGO_C clitkResampleImage.ggo)
-    ADD_EXECUTABLE(clitkResampleImage clitkResampleImage.cxx clitkResampleImageGenericFilter.cxx ${clitkResampleImage_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkResampleImage clitkCommon ITKIO)
+    ADD_EXECUTABLE(clitkResampleImage clitkResampleImage.cxx)
+    TARGET_LINK_LIBRARIES(clitkResampleImage clitkResampleImageLib clitkCommon ITKIO)
 
     WRAP_GGO(clitkMinMaxMask_GGO_C clitkMinMaxMask.ggo)
     ADD_EXECUTABLE(clitkMinMaxMask clitkMinMaxMask.cxx ${clitkMinMaxMask_GGO_C})
     TARGET_LINK_LIBRARIES(clitkMinMaxMask clitkCommon ITKIO  )
 
-    WRAP_GGO(clitkAutoCrop_GGO_C clitkAutoCrop.ggo)
-    ADD_EXECUTABLE(clitkAutoCrop clitkAutoCrop.cxx ${clitkAutoCrop_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkAutoCrop clitkCommon ITKIO )
+    WRAP_GGO(clitkAutoCrop_GGO_C clitkAutoCrop.ggo)
+    ADD_EXECUTABLE(clitkAutoCrop clitkAutoCrop.cxx ${clitkAutoCrop_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkAutoCrop clitkCommon ITKIO )
 
     WRAP_GGO(clitkDicomRTStruct2BinaryImage_GGO_C clitkDicomRTStruct2BinaryImage.ggo)
-    ADD_EXECUTABLE(clitkDicomRTStruct2BinaryImage clitkDicomRT_ROI_ConvertToImageFilter.cxx clitkDicomRTStruct2BinaryImage.cxx ${clitkDicomRTStruct2BinaryImage_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkDicomRTStruct2BinaryImage ITKCommon clitkDicomRTStruct clitkCommon ITKIO QVTK)
+    ADD_EXECUTABLE(clitkDicomRTStruct2BinaryImage clitkDicomRTStruct2BinaryImage.cxx ${clitkDicomRTStruct2BinaryImage_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkDicomRTStruct2BinaryImage ITKCommon clitkDicomRTStruct clitkCommon ITKIO )
 
     WRAP_GGO(clitkImageLog_GGO_C clitkImageLog.ggo)
     ADD_EXECUTABLE(clitkImageLog clitkImageLog.cxx ${clitkImageLog_GGO_C})
@@ -141,14 +155,13 @@ IF (CLITK_BUILD_TOOLS)
     ADD_EXECUTABLE(clitkBackProjectImage clitkBackProjectImage.cxx clitkBackProjectImageGenericFilter.cxx ${clitkBackProjectImage_GGO_C})
     TARGET_LINK_LIBRARIES(clitkBackProjectImage ITKIO clitkCommon )
 
-    WRAP_GGO(clitkCropImage_GGO_C clitkCropImage.ggo)
-    ADD_EXECUTABLE(clitkCropImage clitkCropImage.cxx clitkCropImageGenericFilter.cxx ${clitkCropImage_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkCropImage clitkCommon ITKIO)
-
-# WRAP_GGO(clitkExtractSlice_GGO_C clitkExtractSlice.ggo)
-# ADD_EXECUTABLE(clitkExtractSlice clitkExtractSlice.cxx clitkExtractSliceGenericFilter.cxx ${clitkExtractSlice_GGO_C})
-# TARGET_LINK_LIBRARIES(clitkExtractSlice clitkCommon ITKIO)
+    ADD_EXECUTABLE(clitkCropImage clitkCropImage.cxx ${clitkCropImage_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkCropImage clitkCropImageLib clitkCommon ITKIO)
 
+    # WRAP_GGO(clitkExtractSlice_GGO_C clitkExtractSlice.ggo)
+    # ADD_EXECUTABLE(clitkExtractSlice clitkExtractSlice.cxx clitkExtractSliceGenericFilter.cxx ${clitkExtractSlice_GGO_C})
+    # TARGET_LINK_LIBRARIES(clitkExtractSlice clitkCommon ITKIO)
+    
     WRAP_GGO(clitkFlipImage_GGO_C clitkFlipImage.ggo)
     ADD_EXECUTABLE(clitkFlipImage clitkFlipImage.cxx clitkFlipImageGenericFilter.cxx ${clitkFlipImage_GGO_C})
     TARGET_LINK_LIBRARIES(clitkFlipImage clitkCommon ITKIO)
@@ -224,4 +237,16 @@ IF (CLITK_BUILD_TOOLS)
     WRAP_GGO(clitkValuesToBSplineCoefficients_GGO_C clitkValuesToBSplineCoefficients.ggo)
     ADD_EXECUTABLE(clitkValuesToBSplineCoefficients  clitkValuesToBSplineCoefficients.cxx clitkValuesToBSplineCoefficientsGenericFilter.cxx ${clitkValuesToBSplineCoefficients_GGO_C})
     TARGET_LINK_LIBRARIES(clitkValuesToBSplineCoefficients clitkCommon ITKIO)
+
+    ADD_EXECUTABLE(clitkMIP clitkMIP.cxx clitkMIPGenericFilter.cxx)
+    TARGET_LINK_LIBRARIES(clitkMIP clitkMIPLib clitkCommon ITKIO)
+
+    WRAP_GGO(clitkRelativePosition_GGO_C clitkRelativePosition.ggo)
+    ADD_EXECUTABLE(clitkRelativePosition  clitkRelativePosition.cxx ${clitkRelativePosition_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkRelativePosition clitkCommon ITKIO)
+
+    WRAP_GGO(clitkTransformLandmarks_GGO_C clitkTransformLandmarks.ggo)
+    ADD_EXECUTABLE(clitkTransformLandmarks clitkTransformLandmarks.cxx ${clitkTransformLandmarks_GGO_C})
+    TARGET_LINK_LIBRARIES(clitkTransformLandmarks clitkCommon ITKIO)
+
 ENDIF(CLITK_BUILD_TOOLS)