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Fixed bug with CMakeLists and VTK
[clitk.git] / tools / CMakeLists.txt
diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt
index f227ac75909e082cd02494b0ce9ca9df5542e811..e9f8f1e28a77d200f8bf9c5c4fc93371ae70208c 100644 (file)
--- a/tools/CMakeLists.txt
+++ b/tools/CMakeLists.txt
@@ -11,6 +11,9 @@ ADD_LIBRARY(clitkBinarizeImageLib clitkBinarizeImageGenericFilter.cxx ${clitkBin
 WRAP_GGO(clitkImageArithm_GGO_C clitkImageArithm.ggo)
 ADD_LIBRARY(clitkImageArithmImageLib clitkImageArithmGenericFilter.cxx ${clitkImageArithm_GGO_C})
 
+WRAP_GGO(clitkVectorArithm_GGO_C clitkVectorArithm.ggo)
+ADD_LIBRARY(clitkVectorArithmLib clitkVectorArithmGenericFilter.cxx ${clitkVectorArithm_GGO_C})
+
 WRAP_GGO(clitkResampleImage_GGO_C clitkResampleImage.ggo)
 ADD_LIBRARY(clitkResampleImageLib clitkResampleImageGenericFilter.cxx ${clitkResampleImage_GGO_C})
 
@@ -54,6 +57,11 @@ IF (CLITK_BUILD_TOOLS)
   TARGET_LINK_LIBRARIES(clitkVFResample clitkCommon ${ITK_LIBRARIES})
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVFResample)
 
+  WRAP_GGO(clitkVFInterpolate_GGO_C clitkVFInterpolate.ggo)
+  ADD_EXECUTABLE(clitkVFInterpolate clitkVFInterpolate.cxx clitkVFInterpolateGenericFilter.cxx ${clitkVFInterpolate_GGO_C})
+  TARGET_LINK_LIBRARIES(clitkVFInterpolate clitkCommon ${ITK_LIBRARIES})
+  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVFInterpolate)
+
   WRAP_GGO(clitkImageCreate_GGO_C clitkImageCreate.ggo)
   ADD_EXECUTABLE(clitkImageCreate clitkImageCreate.cxx ${clitkImageCreate_GGO_C})
   TARGET_LINK_LIBRARIES(clitkImageCreate clitkCommon  ${ITK_LIBRARIES})
@@ -93,7 +101,7 @@ IF (CLITK_BUILD_TOOLS)
   WRAP_GGO(clitkAffineTransform_GGO_C clitkAffineTransform.ggo)
   ADD_EXECUTABLE(clitkAffineTransform clitkAffineTransform.cxx ${clitkAffineTransform_GGO_C})
   TARGET_LINK_LIBRARIES(clitkAffineTransform clitkCommon ${ITK_LIBRARIES} )
-  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicom2Image)
+  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAffineTransform)
 
   WRAP_GGO(clitkSetBackground_GGO_C clitkSetBackground.ggo)
   ADD_EXECUTABLE(clitkSetBackground clitkSetBackground.cxx clitkSetBackgroundGenericFilter.cxx ${clitkSetBackground_GGO_C})
@@ -109,6 +117,10 @@ IF (CLITK_BUILD_TOOLS)
   TARGET_LINK_LIBRARIES(clitkImageArithm clitkImageArithmImageLib clitkCommon ${ITK_LIBRARIES} )
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageArithm)
 
+  ADD_EXECUTABLE(clitkVectorArithm clitkVectorArithm.cxx)
+  TARGET_LINK_LIBRARIES(clitkVectorArithm clitkVectorArithmLib clitkCommon ${ITK_LIBRARIES} )
+  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVectorArithm)
+
   WRAP_GGO(clitkUnsharpMask_GGO_C clitkUnsharpMask.ggo)
   ADD_EXECUTABLE(clitkUnsharpMask clitkUnsharpMask.cxx ${clitkUnsharpMask_GGO_C})
   TARGET_LINK_LIBRARIES(clitkUnsharpMask clitkCommon ${ITK_LIBRARIES} ) 
@@ -143,11 +155,6 @@ IF (CLITK_BUILD_TOOLS)
   TARGET_LINK_LIBRARIES(clitkDicomRTStruct2Image clitkDicomRTStruct clitkCommon ${ITK_LIBRARIES} )
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTStruct2Image)
 
-  # WRAP_GGO(clitkImage2DicomRTStruct_GGO_C clitkImage2DicomRTStruct.ggo)
-  # ADD_EXECUTABLE(clitkImage2DicomRTStruct clitkImage2DicomRTStruct.cxx ${clitkImage2DicomRTStruct_GGO_C})
-  # TARGET_LINK_LIBRARIES(clitkImage2DicomRTStruct clitkDicomRTStruct clitkCommon ${ITK_LIBRARIES} )
-  # SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImage2DicomRTStruct)
-
   WRAP_GGO(clitkComposeVF_GGO_C clitkComposeVF.ggo)
   ADD_EXECUTABLE(clitkComposeVF clitkComposeVFGenericFilter.cxx clitkComposeVF.cxx ${clitkComposeVF_GGO_C})
   TARGET_LINK_LIBRARIES(clitkComposeVF ${ITK_LIBRARIES} clitkCommon)
@@ -185,7 +192,7 @@ IF (CLITK_BUILD_TOOLS)
   WRAP_GGO(clitkImageMoment_GGO_C clitkImageMoment.ggo)
   ADD_EXECUTABLE(clitkImageMoment clitkImageMoment.cxx clitkImageMomentGenericFilter.cxx ${clitkImageMoment_GGO_C})
   TARGET_LINK_LIBRARIES(clitkImageMoment clitkCommon ${ITK_LIBRARIES})
-  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicom2Image)
+  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageMoment)
 
   WRAP_GGO(clitkImageStatistics_GGO_C clitkImageStatistics.ggo)
   ADD_EXECUTABLE(clitkImageStatistics clitkImageStatistics.cxx clitkImageStatisticsGenericFilter.cxx ${clitkImageStatistics_GGO_C})
@@ -211,36 +218,16 @@ IF (CLITK_BUILD_TOOLS)
   TARGET_LINK_LIBRARIES(clitkMIP clitkMIPLib clitkCommon ${ITK_LIBRARIES})
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMIP)
 
-  WRAP_GGO(clitkRelativePosition_GGO_C clitkRelativePosition.ggo)
-  ADD_EXECUTABLE(clitkRelativePosition  clitkRelativePosition.cxx ${clitkRelativePosition_GGO_C})
-  TARGET_LINK_LIBRARIES(clitkRelativePosition clitkCommon ${ITK_LIBRARIES})
-  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkRelativePosition)
-
-  WRAP_GGO(clitkLabelImageOverlapMeasure_GGO_C clitkLabelImageOverlapMeasure.ggo)
-  ADD_EXECUTABLE(clitkLabelImageOverlapMeasure clitkLabelImageOverlapMeasure.cxx ${clitkLabelImageOverlapMeasure_GGO_C})
-  TARGET_LINK_LIBRARIES(clitkLabelImageOverlapMeasure clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES} )
-  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkLabelImageOverlapMeasure)
-
-  WRAP_GGO(clitkRelativePositionAnalyzer_GGO_C clitkRelativePositionAnalyzer.ggo)
-  ADD_EXECUTABLE(clitkRelativePositionAnalyzer ../itk/clitkRelativePositionDataBase.cxx clitkRelativePositionAnalyzer.cxx ${clitkRelativePositionAnalyzer_GGO_C})
-  TARGET_LINK_LIBRARIES(clitkRelativePositionAnalyzer clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
-  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkRelativePositionAnalyzer)
-
-  WRAP_GGO(clitkRelativePositionDataBaseAnalyzer_GGO_C clitkRelativePositionDataBaseAnalyzer.ggo)
-  ADD_EXECUTABLE(clitkRelativePositionDataBaseAnalyzer ../itk/clitkRelativePositionDataBase.cxx clitkRelativePositionDataBaseAnalyzer.cxx ${clitkRelativePositionDataBaseAnalyzer_GGO_C})
-  TARGET_LINK_LIBRARIES(clitkRelativePositionDataBaseAnalyzer clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
-  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkRelativePositionDataBaseAnalyzer)
-
-  WRAP_GGO(clitkRelativePositionDataBaseBuilder_GGO_C clitkRelativePositionDataBaseBuilder.ggo)
-  ADD_EXECUTABLE(clitkRelativePositionDataBaseBuilder ../itk/clitkRelativePositionDataBase.cxx clitkRelativePositionDataBaseBuilder.cxx ${clitkRelativePositionDataBaseBuilder_GGO_C})
-  TARGET_LINK_LIBRARIES(clitkRelativePositionDataBaseBuilder clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
-  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkRelativePositionDataBaseBuilder)
-
   WRAP_GGO(clitkTransformLandmarks_GGO_C clitkTransformLandmarks.ggo)
   ADD_EXECUTABLE(clitkTransformLandmarks clitkTransformLandmarks.cxx ${clitkTransformLandmarks_GGO_C})
-  TARGET_LINK_LIBRARIES(clitkTransformLandmarks clitkCommon ${ITK_LIBRARIES})
+  TARGET_LINK_LIBRARIES(clitkTransformLandmarks clitkCommon ${ITK_LIBRARIES} ${VTK_LIBRARIES})
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkTransformLandmarks)
 
+  WRAP_GGO(clitkMaskLandmarks_GGO_C clitkMaskLandmarks.ggo)
+  ADD_EXECUTABLE(clitkMaskLandmarks clitkMaskLandmarks.cxx ${clitkMaskLandmarks_GGO_C})
+  TARGET_LINK_LIBRARIES(clitkMaskLandmarks clitkCommon ${ITK_LIBRARIES})
+  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMaskLandmarks)
+
   ADD_EXECUTABLE(clitkMakeSphereImage clitkMakeSphereImage.cxx) # clitkLineProfileGenericFilter.cxx ${clitkLineProfile_GGO_C})
   TARGET_LINK_LIBRARIES(clitkMakeSphereImage clitkCommon ${ITK_LIBRARIES})
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMakeSphereImage)
@@ -260,15 +247,10 @@ IF (CLITK_BUILD_TOOLS)
   TARGET_LINK_LIBRARIES(clitkCatImage clitkCommon ${ITK_LIBRARIES})
   SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkCatImage)
 
-  WRAP_GGO(clitkCoeffsToDVF_GGO_C clitkCoeffsToDVF.ggo)
-  ADD_EXECUTABLE(clitkCoeffsToDVF clitkCoeffsToDVF.cxx ${clitkCoeffsToDVF_GGO_C})
-  TARGET_LINK_LIBRARIES(clitkCoeffsToDVF clitkCommon ${ITK_LIBRARIES})
-  SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkCoeffsToDVF)
-
   IF(CLITK_EXPERIMENTAL)
     WRAP_GGO(clitkBinaryImageToMesh_GGO_C clitkBinaryImageToMesh.ggo)
     ADD_EXECUTABLE(clitkBinaryImageToMesh clitkBinaryImageToMesh.cxx ${clitkBinaryImageToMesh_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkBinaryImageToMesh ${ITK_LIBRARIES} ${VTK_LIBRARIES})
+    TARGET_LINK_LIBRARIES(clitkBinaryImageToMesh itksys ${ITK_LIBRARIES} ${VTK_LIBRARIES})
     SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBinaryImageToMesh)
 
     WRAP_GGO(clitkMeshToBinaryImage_GGO_C clitkMeshToBinaryImage.ggo)
@@ -278,11 +260,19 @@ IF (CLITK_BUILD_TOOLS)
 
     WRAP_GGO(clitkMeshViewer_GGO_C clitkMeshViewer.ggo)
     ADD_EXECUTABLE(clitkMeshViewer clitkMeshViewer.cxx ${clitkMeshViewer_GGO_C})
-    TARGET_LINK_LIBRARIES(clitkMeshViewer ${VTK_LIBRARIES})
+    TARGET_LINK_LIBRARIES(clitkMeshViewer ${ITK_LIBRARIES} ${VTK_LIBRARIES})
     SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMeshViewer)
   ENDIF(CLITK_EXPERIMENTAL)
 
-  SET_TARGET_PROPERTIES(${TOOLS_INSTALL} PROPERTIES INSTALL_RPATH "${VTK_DIR}:${ITK_DIR}" )  
+  IF(ITK_VERSION_MAJOR VERSION_LESS 4)
+    MESSAGE("clitkDicomRTPlan2Gate is not compatible with GDCM<2 (ITK<4). It will not be built.")
+  ELSE(ITK_VERSION_MAJOR VERSION_LESS 4)
+    WRAP_GGO(clitkDicomRTPlan2Gate_GGO_C clitkDicomRTPlan2Gate.ggo)
+    ADD_EXECUTABLE(clitkDicomRTPlan2Gate clitkDicomRTPlan2Gate.cxx clitkDicomRTPlan2Gate_ggo.c)
+    TARGET_LINK_LIBRARIES(clitkDicomRTPlan2Gate clitkCommon ${ITK_LIBRARIES})
+    SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTPlan2Gate)
+  ENDIF(ITK_VERSION_MAJOR VERSION_LESS 4)
+
   INSTALL (TARGETS ${TOOLS_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
 
 ENDIF(CLITK_BUILD_TOOLS)
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