Change header includion from .h to .cxx file

[clitk.git] / tools / clitkAffineTransform.ggo

diff --git a/tools/clitkAffineTransform.ggo b/tools/clitkAffineTransform.ggo
index dc64bffbb9c1df25d36d2c43beb062825aef317b..1d4c43ad85a4370e7d1b9b3a24497f4f150129d5 100644 (file)
--- a/tools/clitkAffineTransform.ggo
+++ b/tools/clitkAffineTransform.ggo
@@ -3,34 +3,36 @@ package "clitkAffineTransform"
 version "1.0"
 purpose "Resample with or without affine transform of 2D, 3D, 4D images or vector fields"
 
-option "config"                -       "Config file"                     string        no
-option "verbose"       v       "Verbose"                         flag          off
+option "config"                - "Config file"                   string        no
+option "verbose"       v "Verbose"                       flag          off
 
 section "I/O"
-option "input"         i       "Input image filename"            string        yes
-option "output"        o       "Output image filename"           string        yes
-option "like"          l       "Resample output this image (size, spacing,origin)"     string  no
-option "transform_grid" -       "Apply affine transform to input grid for output's"     flag    off
+option "input"         i "Input image filename"                                          string yes
+option "output"        o "Output image filename"                                         string yes
+option "like"          l "Resample output this image (size, spacing, origin, direction)" string no
+option "transform_grid" - "Apply affine transform to input grid for output's"             flag   off
 
 section "Options"
-option "size"          -       "New output size if different from input"       int     no      multiple
-option "spacing"       -       "New output spacing if different from input"    double  no      multiple
-option "spacinglike"   -       "New output spacing like this image"            string  no
-option "origin"                -       "New output origin if different from input"     double  no      multiple
-option "matrix"                m       "Affine matrix (homogene) filename"             string  no
-option "elastix"       e       "Read EulerTransform from elastix output file"  string  no
-option "rotate"                r       "Rotation to apply (radians)"                   double  no      multiple
-option "translate"     t       "Translation to apply (mm)"                     double  no      multiple
-option "pad"           -       "Edge padding value"                            double  no      default="0.0"
+option "size"          - "New output size if different from input"     int     no      multiple
+option "spacing"       - "New output spacing if different from input"  double  no      multiple
+option "spacinglike"   - "New output spacing like this image"          string  no
+option "origin"                - "New output origin if different from input"   double  no      multiple
+option "direction"     - "New output direction if different from input" double no      multiple
+option "matrix"                m "Affine matrix (homogene) filename"           string  no
+option "elastix"       e "Read EulerTransform from elastix output file (combine if multiple)"  string  no
+option "rotate"                r "Rotation to apply (radians)"                 double  no      multiple
+option "translate"     t "Translation to apply (mm)"                   double  no      multiple
+option "pad"           - "Edge padding value"                          double  no      default="0.0"
+option "adaptive"              - "Adapt the size, spacing or the origin when one of the previous tag is on (use previous clitkResampleImage)" flag off
 
 section "Interpolation"
-option "interp"                -       "Interpolation: 0=NN, 1=Linear, 2=BSpline, 3=BLUT"      int     no  default="1"
-option "interpOrder"   -       "Order if BLUT or BSpline (0-5)"                        int     no  default="3"
-option "interpSF"      -       "Sampling factor if BLUT"                               int     no  default="20"
-option "interpVF"      -       "Interpolation: 0=NN, 1=Linear, 2=BSpline, 3=BLUT"      int     no  default="1"
-option "interpVFOrder" -       "Order if BLUT or BSpline (0-5)"                        int     no  default="3"
-option "interpVFSF"    -       "Sampling factor if BLUT"                               int     no  default="20"
-
-
-
-
+option "interp"                - "Interpolation: 0=NN, 1=Linear, 2=BSpline, 3=BLUT"    int     no  default="1"
+option "interpOrder"   - "Order if BLUT or BSpline (0-5)"                      int     no  default="3"
+option "interpSF"      - "Sampling factor if BLUT"                             int     no  default="20"
+option "interpVF"      - "Interpolation: 0=NN, 1=Linear, 2=BSpline, 3=BLUT"    int     no  default="1"
+option "interpVFOrder" - "Order if BLUT or BSpline (0-5)"                      int     no  default="3"
+option "interpVFSF"    - "Sampling factor if BLUT"                             int     no  default="20"
+
+section "Gaussian filtering"
+option "gauss" g "Apply gaussian filter before (sigma in mm) (default=0.0)" double no multiple
+option "autogauss" - "Apply gaussian filter before with auto sigma when downsampling (default=off)" flag off
\ No newline at end of file