*** empty log message ***

[clitk.git] / tools / clitkAutoCropGenericFilter.txx

diff --git a/tools/clitkAutoCropGenericFilter.txx b/tools/clitkAutoCropGenericFilter.txx
new file mode 100755 (executable)
index 0000000..fcc7384
--- /dev/null
+++ b/tools/clitkAutoCropGenericFilter.txx
@@ -0,0 +1,91 @@
+/*=========================================================================
+  Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
+
+  Authors belong to: 
+  - University of LYON              http://www.universite-lyon.fr/
+  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
+
+  This software is distributed WITHOUT ANY WARRANTY; without even
+  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+  PURPOSE.  See the copyright notices for more information.
+
+  It is distributed under dual licence
+
+  - BSD        See included LICENSE.txt file
+  - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+  ======================================================================-====*/
+
+#include "clitkImageCommon.h"
+
+//--------------------------------------------------------------------
+template<class ArgsInfoType>
+clitk::AutoCropGenericFilter<ArgsInfoType>::AutoCropGenericFilter():
+  ImageToImageGenericFilter<Self>("AutoCrop") 
+{
+  // Default values
+  cmdline_parser_clitkAutoCrop_init(&mArgsInfo);
+  //InitializeImageType<2>();
+  InitializeImageType<3>();
+  //InitializeImageType<4>();
+}
+//--------------------------------------------------------------------
+
+
+//--------------------------------------------------------------------
+template<class ArgsInfoType>
+template<unsigned int Dim>
+void clitk::AutoCropGenericFilter<ArgsInfoType>::InitializeImageType() 
+{  
+  // ADD_DEFAULT_IMAGE_TYPES(Dim);
+  ADD_IMAGE_TYPE(Dim, uchar);
+  ADD_IMAGE_TYPE(Dim, ushort);
+  // ADD_IMAGE_TYPE(Dim, uint);
+ //  ADD_IMAGE_TYPE(Dim, ulong);
+  // ADD_IMAGE_TYPE(Dim, int);
+  // ADD_IMAGE_TYPE(Dim, float);
+}
+//--------------------------------------------------------------------
+  
+
+//--------------------------------------------------------------------
+template<class ArgsInfoType>
+void clitk::AutoCropGenericFilter<ArgsInfoType>::SetArgsInfo(const ArgsInfoType & a) 
+{
+  mArgsInfo=a;
+  SetIOVerbose(mArgsInfo.verbose_flag);
+  if (mArgsInfo.imagetypes_flag) this->PrintAvailableImageTypes();
+  if (mArgsInfo.input_given)   AddInputFilename(mArgsInfo.input_arg);
+  if (mArgsInfo.output_given)  AddOutputFilename(mArgsInfo.output_arg);
+}
+//--------------------------------------------------------------------
+
+
+//--------------------------------------------------------------------
+// Update with the number of dimensions and the pixeltype
+//--------------------------------------------------------------------
+template<class ArgsInfoType>
+template<class ImageType>
+void clitk::AutoCropGenericFilter<ArgsInfoType>::UpdateWithInputImageType() 
+{ 
+  // Reading input
+  typename ImageType::Pointer input = this->template GetInput<ImageType>(0);
+
+  // Create filter
+  typedef clitk::AutoCropFilter<ImageType> FilterType;
+  typename FilterType::Pointer filter = FilterType::New();
+    
+  // Set global Options 
+  filter->SetBackgroundValue(mArgsInfo.BG_arg);
+  filter->SetInput(input);
+
+  // Go !
+  filter->Update();
+
+  // Write/Save results
+  typename ImageType::Pointer output = filter->GetOutput();
+  this->template SetNextOutput<ImageType>(output); 
+}
+//--------------------------------------------------------------------
+
+