Precise the unite of the bounding box for clitkCropImageFilter

[clitk.git] / tools / clitkCropImage.ggo

diff --git a/tools/clitkCropImage.ggo b/tools/clitkCropImage.ggo
old mode 100755 (executable)
new mode 100644 (file)
index ce5eab1..2ed5ab5
--- a/tools/clitkCropImage.ggo
+++ b/tools/clitkCropImage.ggo
@@ -1,14 +1,34 @@
 #File clitkCropImage.ggo
 package "clitkCropImage"
 version "1.0"
-purpose "Reduce the image size by removing regions at the lower and upper end."
+purpose "Crop an image according to a given extends or AutoCrop with a background value or like another image.
+In all cases, by default, the output origin is set to be able to overlay input and output without registration."
 
-option "config"                -       "Config file"                     string        no
-option "verbose"       v       "Verbose"                         flag          off
+option "config"                   -  "Config file"                 string  no
+option "imagetypes"        -  "Display allowed image types" flag    off
+option "verbose"           v  "Verbose"                            flag    off
+option "verboseOption"     -  "Display options values"      flag    off
+option "verboseWarningOff" -  "Do not display warning"      flag    off
+
+section "I/O"
 
 option "input"         i       "Input image filename"            string        yes
 option "output"        o       "Output image filename"           string        yes
-option "boundingBox"           b       "Bounding box of the crop region" int   no      multiple
-option "lower"         l       "Size of the lower crop region"   int   no  multiple
-option "upper"         u       "Size of the upper crop region"   int   no  multiple
+
+section "Used determined crop"
+option "boundingBox"           b       "Bounding box of the crop region in pixel (in 3D: =x1,x2,y1,y2,z1,z2)"  int     no  multiple
+option "lower"         l       "Size of the lower crop region (multiple values)"         int   no  multiple
+option "upper"         u       "Size of the upper crop region (multiple values)"         int   no  multiple
 option "origin"        -       "Set new origin to zero"          flag  off  
+
+section "AutoCrop with BG value"
+option "BG"            -       "Background value in input."      double default="0" no
+
+section "Crop like another image"
+option "like"          -       "Crop like this image (must have the same spacing"   string no
+option "updateOrigin"          -       "By default, with like image, the output origin is the same than the like image. Set to on the flag to keep the origin."          flag  off
+option "BGLike"                -       "Background value in output (if like larger)"        double default="0" no
+
+
+
+