add small region

[clitk.git] / tools / clitkDicom2Image.cxx

diff --git a/tools/clitkDicom2Image.cxx b/tools/clitkDicom2Image.cxx
index 2819fdea6a03fdf5f3bb47cd854deee5c942c437..a6323da9de5ba6ad89c75ab8372049ef569b3200 100644 (file)
--- a/tools/clitkDicom2Image.cxx
+++ b/tools/clitkDicom2Image.cxx
@@ -23,6 +23,7 @@
 #include "vvImageReader.h"
 #include "vvImageWriter.h"
 #include <gdcmFile.h>
+#include <vtkVersion.h>
 #include <vtkImageChangeInformation.h>
 #if GDCM_MAJOR_VERSION == 2
   #include <gdcmImageHelper.h>
@@ -77,20 +78,18 @@ int main(int argc, char * argv[])
     
     series_numbers.insert(series_number);
     theorigin[series_number] = gdcm::ImageHelper::GetOriginValue(hreader.GetFile());
-    std::cout << "theorigin[series_number][0] " << theorigin[series_number][0] << std::endl;
-    std::cout << "theorigin[series_number][1] " << theorigin[series_number][1] << std::endl;
-    std::cout << "theorigin[series_number][2] " << theorigin[series_number][2] << std::endl;
     sliceLocations[series_number].push_back(theorigin[series_number][2]);
     seriesFiles[series_number].push_back(input_files[i]);
     
     gdcm::Attribute<0x28, 0x100> pixel_size;
     pixel_size.SetFromDataSet(ds);
-    if (pixel_size.GetValue() != 16)
-    {
-      std::cerr << "Pixel type 2 bytes ! " << std::endl;
-      std::cerr << "In file " << input_files[i] << std::endl;
-      exit(0);
-    }
+    /* if (pixel_size.GetValue() != 16)
+       {
+       std::cerr << "Pixel type not 2 bytes ! " << std::endl;
+       std::cerr << "In file " << input_files[i] << std::endl;
+       exit(0);
+       }
+    */
 #else
     if (args_info.verbose_flag)
       std::cout << "Not using GDCM-2.x" << std::endl;
@@ -110,11 +109,12 @@ int main(int argc, char * argv[])
   theorigin[series_number][2] = header->GetZOrigin();
   sliceLocations[series_number].push_back(theorigin[series_number][2]);
   seriesFiles[series_number].push_back(input_files[i]);
-  if (header->GetPixelSize() != 2) {
+  /*if (header->GetPixelSize() != 2) {
     std::cerr << "Pixel type 2 bytes ! " << std::endl;
     std::cerr << "In file " << input_files[i] << std::endl;
     exit(0);
   }
+  */
 #endif
   }
 
@@ -192,7 +192,11 @@ int main(int argc, char * argv[])
       std::vector<int> size = image->GetSize();
       origin[0] = -spacing[0]*size[0]/2.0;
       origin[1] = -spacing[1]*size[1]/2.0;
+#if VTK_MAJOR_VERSION <= 5
       modifier->SetInput(vtk_image);
+#else
+      modifier->SetInputData(vtk_image);
+#endif
       modifier->SetOutputOrigin(origin[0], origin[1], locs[sliceIndex[0]]);
       modifier->Update();
       vvImage::Pointer focal_image = vvImage::New();