New ComputeOptimalThreshold

[clitk.git] / tools / clitkGammaIndex.ggo

diff --git a/tools/clitkGammaIndex.ggo b/tools/clitkGammaIndex.ggo
index 1e6870dd98b4f7c62266eb42dc530b2740ace04d..20c87f97b31c0fa99f6f6455411e7c83f2404e86 100644 (file)
--- a/tools/clitkGammaIndex.ggo
+++ b/tools/clitkGammaIndex.ggo
@@ -1,7 +1,7 @@
 #File  clitkGammaIndex.ggo
 package "clitkGammaIndex"
-version "1.0"
-purpose "Compute the gamma index map for target dose map vs reference dose map. If verbose is given, the ratio of gamma>1 pixels of the total pixel in the image is computed. Absolute dose margin has priority over relative dose margin. The relative dose margin is relative to the maximum dose in the reference image. Reference and target images must share the same origin, the same spacing and the same size."
+version "1.1"
+purpose "Compute the gamma index map for target dose map vs reference dose map. If verbose is given, the ratio of gamma>1 pixels of the total pixel in the image is computed. Absolute dose margin has priority over relative dose margin. The relative dose margin is relative to the maximum dose in the reference image.\n\nclitkGammaIndex -v -i ref.mhd -j disp.mhd -o gamma.mhd -s 3 -r 0.04\nthis will compute the 3mm 4% gamma index between ref and disp."
 
 option "verbose"     v         "Verbose"                         flag     off
 
@@ -12,5 +12,4 @@ option "output"    o  "Output image filename"   string   yes
 option "spatial-margin"   s    "Spatial margin [mm]"     double   yes
 option "relative-dose-margin"   r      "Dose margin relative to max dose in reference [%]"       double   no
 option "absolute-dose-margin"   d      "Absolute dose margin [Gray]"     double   no
-option "isodose-number"   n    "Number of isodose computed in distance map"     int default="128"  no