Add clitkImage2Dicom tool

[clitk.git] / tools / clitkImage2DicomGenericFilter.h

diff --git a/tools/clitkImage2DicomGenericFilter.h b/tools/clitkImage2DicomGenericFilter.h
new file mode 100644 (file)
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--- /dev/null
+++ b/tools/clitkImage2DicomGenericFilter.h
@@ -0,0 +1,152 @@
+/*=========================================================================
+  Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
+
+  Authors belong to: 
+  - University of LYON              http://www.universite-lyon.fr/
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
+  - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
+
+  This software is distributed WITHOUT ANY WARRANTY; without even
+  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+  PURPOSE.  See the copyright notices for more information.
+
+  It is distributed under dual licence
+
+  - BSD        See included LICENSE.txt file
+  - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+===========================================================================**/
+#ifndef clitkImage2DicomGenericFilter_h
+#define clitkImage2DicomGenericFilter_h
+
+/* =================================================
+ * @file   clitkImage2DicomGenericFilter.h
+ * @author 
+ * @date   
+ * 
+ * @brief 
+ * 
+ ===================================================*/
+
+
+// clitk include
+#include "clitkIO.h"
+#include "clitkImageCommon.h"
+#include "clitkImage2Dicom_ggo.h"
+
+//itk include
+#include "itkLightObject.h"
+#include "itkGDCMImageIO.h"
+#include "itkMetaDataDictionary.h"
+#include "itkGDCMSeriesFileNames.h"
+#include "itkImageSeriesReader.h"
+#include "itkImageSeriesWriter.h"
+#include <vector>
+#include <itksys/SystemTools.hxx>
+
+#include "itkImage.h"
+#include "itkMinimumMaximumImageFilter.h"
+ 
+#include "itkGDCMImageIO.h"
+#include "itkGDCMSeriesFileNames.h"
+#include "itkNumericSeriesFileNames.h"
+ 
+#include "itkImageSeriesReader.h"
+#include "itkImageSeriesWriter.h"
+ 
+#include "itkResampleImageFilter.h"
+ 
+#if ( ( ITK_VERSION_MAJOR == 4 ) && ( ITK_VERSION_MINOR < 6 ) )
+#include "itkShiftScaleImageFilter.h"
+#endif
+ 
+#include "itkIdentityTransform.h"
+#include "itkLinearInterpolateImageFunction.h"
+ 
+#include <itksys/SystemTools.hxx>
+ 
+#if ITK_VERSION_MAJOR >= 4
+#include "gdcmUIDGenerator.h"
+#else
+#include "gdcm/src/gdcmFile.h"
+#include "gdcm/src/gdcmUtil.h"
+#endif
+ 
+#include <string>
+#include <sstream>
+
+namespace clitk 
+{
+  template<class args_info_type>
+  class ITK_EXPORT Image2DicomGenericFilter : public itk::LightObject
+  {
+  public:
+    //----------------------------------------
+    // ITK
+    //----------------------------------------
+    typedef Image2DicomGenericFilter                   Self;
+    typedef itk::LightObject                   Superclass;
+    typedef itk::SmartPointer<Self>            Pointer;
+    typedef itk::SmartPointer<const Self>      ConstPointer;
+   
+    // Method for creation through the object factory
+    itkNewMacro(Self);  
+
+    // Run-time type information (and related methods)
+    itkTypeMacro( Image2DicomGenericFilter, LightObject );
+
+
+    //----------------------------------------
+    // Typedefs
+    //----------------------------------------
+
+
+    //----------------------------------------
+    // Set & Get
+    //----------------------------------------    
+    void SetArgsInfo(const args_info_type & a)
+    {
+      m_ArgsInfo=a;
+      m_Verbose=m_ArgsInfo.verbose_flag;
+      m_InputFileName=m_ArgsInfo.input_arg;
+    }
+    
+    
+    //----------------------------------------  
+    // Update
+    //----------------------------------------  
+    void Update();
+
+  protected:
+
+    //----------------------------------------  
+    // Constructor & Destructor
+    //----------------------------------------  
+    Image2DicomGenericFilter();
+    ~Image2DicomGenericFilter() {};
+
+    
+    //void CopyDictionary (itk::MetaDataDictionary &fromDict, itk::MetaDataDictionary &toDict);
+    //----------------------------------------  
+    // Templated members
+    //----------------------------------------  
+    template <unsigned int Dimension>  void UpdateWithDim(std::string PixelType);
+    template <unsigned int Dimension, class PixelType>  void UpdateWithDimAndPixelType();
+    
+    
+     //----------------------------------------  
+    // Data members
+    //----------------------------------------
+    args_info_type m_ArgsInfo;
+    bool m_Verbose;
+    std::string m_InputFileName;
+
+  };
+
+
+} // end namespace clitk
+
+#ifndef ITK_MANUAL_INSTANTIATION
+#include "clitkImage2DicomGenericFilter.txx"
+#endif
+
+#endif // #define clitkImage2DicomGenericFilter_h