# file clitkImage2DicomRTStruct.ggo
package "clitk"
-version "Convert (binary) image to DICOM RT Structure Set (contours)"
+version "Add a (binary) image inside a DICOM RT Structure Set (contours)"
-option "config" - "Config file" string no
-option "verbose" v "Verbose" flag off
+option "config" - "Config file" string no
+option "verbose" v "Verbose" flag off
-option "input" i "Input image file (binary image" string yes
-option "output" o "Output DicomRT filename" string yes
+option "input" i "Input image file (binary image) to be converted into contours" string multiple yes
+option "rtstruct" r "Input rt struct" string yes
+option "dicom" d "Input folder where the initial dicom ct is" string yes
+option "output" o "Output DicomRT filename" string yes
-
-# option "image" j "Used to read image info (spacing, origin)" string yes
-# option "roi" r "ROI to binarize (if -1 = all roi)" int no default="-1"
-
-# option "crop" c "Crop binary mask" flag off
-
-#option "roi" r "ROI to print (ID)" int no
-#option "contour" c "contour to print (ID)" int no
-#option "offset" o "to display points as image offsets" flag off
+option "threshold" t "Threshold for binary image" float no default = "0.5"
+option "skip" s "Do not write in output the structures that was in input" flag off
+option "roitype" - "Name of the type of roi added into the rt-struct" string no default = "ORGAN"